HsaEX6062945 @ hg38
Exon Skipping
Gene
ENSG00000119522 | DENND1A
Description
DENN domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr9:123557570-123609481:-
Coord C1 exon
chr9:123609436-123609481
Coord A exon
chr9:123583169-123583270
Coord C2 exon
chr9:123557570-123557695
Length
102 bp
Sequences
Splice sites
3' ss Seq
GGATTTTTTTCTCCTTGCAGAAA
3' ss Score
10.48
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
TGCTCCCATGCCCTACCTCATAGGAATCCATTTAAGTTTAATGGAG
Seq A exon
AAAGTCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACACCAACACCCTGGAAACCCCCTTCGATGACCTCCAGAGCCTCCCAAACGACGTG
Seq C2 exon
ATCTCTTCCCTGAAGAACAGGCTGAAAAAGGTCTCCACAACCACTGGGGATGGTGTGGCCAGAGCGTTCCTCAAGGCCCAGGCTGCTTTCTTCGGTAGCTACCGAAACGCTCTGAAAATCGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119522-'57-63,'57-52,59-63
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.2=100)
A:
PF0214116=DENN=PD(9.3=50.0)
C2:
PF0345514=dDENN=PU(39.7=64.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCATGCCCTACCTCATA
R:
CGGCTCGATTTTCAGAGCGTT
Band lengths:
171-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains