GgaEX1019252 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9061816-9103299:-
Coord C1 exon
chr17:9103254-9103299
Coord A exon
chr17:9095415-9095516
Coord C2 exon
chr17:9061816-9061917
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCTCTTGAATTTTAGAAA
3' ss Score
9.58
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
TGCCCCAATGCCCTACCTCATTGGAATACATTTAAGTTTGATGGAG
Seq A exon
AAAGTTAGAAATATGGCCCTGGAAGATGTAGTGATTCTTAACGTAGACACCAACACACTGGAAACCCCTTTTGATGACCTTCAGAGCCTACCTAATGATGTG
Seq C2 exon
GGCGAACCCATCACGTTTTGTGAAGAAACATTTGTGTCCCATCGTTCTGCTGTCATGAGGCAGTTCCTTCAGAATGCCATTCAGCTCCAGCTCTTTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157_MULTIEX2-10/19=9-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.2=100)
A:
PF0214116=DENN=PD(9.3=50.0)
C2:
PF0345514=dDENN=FE(49.3=100)
Main Skipping Isoform:
ENSGALT00000001740fB6703
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAATGCCCTACCTCATTG
R:
GCTGGAGCTGAATGGCATTCT
Band lengths:
135-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]