BtaEX6046060 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94674210-94732519:-
Coord C1 exon
chr11:94732474-94732519
Coord A exon
chr11:94707812-94707913
Coord C2 exon
chr11:94674210-94674335
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCTTTTACTTGCAGAAA
3' ss Score
10.82
5' ss Seq
GTGGTGGGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
TGCTCCCATGCCCTACCTCATAGGAATCCATTTAAGTTTAATGGAG
Seq A exon
AAAGTCAGAAGCATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACACCAACACCCTGGAAACCCCCTTTGATGACCTCCAGAGCCTCCCAAATGATGTG
Seq C2 exon
ATCTCTTCCTTGAAGAGCCGGCTGAAGAAGGTGTCCACGACAACTGGTGATGGTGTGGCCAGAGCCTTCCTCAAGGCCCAGGCCGCTTTCTTCGGCAGCTACCGAAACGCTCTGAAAATCGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610-'36-41,'36-37,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.2=100)
A:
PF0214116=DENN=PD(9.3=50.0)
C2:
PF0345514=dDENN=PU(39.7=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCATGCCCTACCTCATA
R:
CGGCTCGATTTTCAGAGCGTT
Band lengths:
171-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]