MmuEX0014216 @ mm9
Exon Skipping
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:37792139-37838625:-
Coord C1 exon
chr2:37838580-37838625
Coord A exon
chr2:37817161-37817262
Coord C2 exon
chr2:37792139-37792264
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGGATTTTCTTTACTTGCAGAAG
3' ss Score
8.52
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
TGCTCCCATGCCCTACCTCATAGGAATCCATTTAAGTTTAATGGAG
Seq A exon
AAGGTCAGGAACATGGCCCTCGATGATGTTGTGATCTTGAACGTGGACACCAACACCCTGGAAACCCCTTTTGATGACCTCCAGAGCCTCCCAAATGATGTG
Seq C2 exon
ATCTCCTCCCTGAAGAACAGGCTGAAGAAGGTCTCTACAACCACAGGTGATGGGGTGGCCAGAGCCTTCCTCAAGGCCCAGGCTGCTTTCTTTGGCAGCTACCGGAATGCACTGAAAATTGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392_MULTIEX2-12/12=11-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.069
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.3=100)
A:
PF0214116=DENN=PD(9.4=50.0)
C2:
PF0345514=dDENN=PU(56.2=64.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCATGCCCTACCTCATA
R:
GGCTCAATTTTCAGTGCATTCCG
Band lengths:
170-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: