GgaEX1019252 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9802426-9816876:-
Coord C1 exon
chr17:9816831-9816876
Coord A exon
chr17:9808992-9809093
Coord C2 exon
chr17:9802426-9802551
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCTCTTGAATTTTAGAAA
3' ss Score
9.58
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
TGCCCCAATGCCCTACCTCATTGGAATACATTTAAGTTTGATGGAG
Seq A exon
AAAGTTAGAAATATGGCCCTGGAAGATGTAGTGATTCTTAACGTAGACACCAACACACTGGAAACCCCTTTTGATGACCTTCAGAGCCTACCTAATGATGTG
Seq C2 exon
GTTTCTGCTCTGAAGAACAGATTGAAGAAGGTTTCTACAACCACTGGAGATGGCGTTGCCAGAGCTTTTCTCAAGGCGCAGGCGTCTTTCTTCGGGAGCTACAGAAACGCACTGAAAATCGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'18-27,'18-25,19-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.2=100)
A:
PF0214116=DENN=PD(9.3=50.0)
C2:
PF0345514=dDENN=PU(40.3=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAATGCCCTACCTCATTG
R:
AGGTTCGATTTTCAGTGCGTT
Band lengths:
170-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]