RnoEX0027128 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56157052-56173172:+
Coord C1 exon
chr13:56157052-56157097
Coord A exon
chr13:56161619-56161720
Coord C2 exon
chr13:56173047-56173172
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAATTGTGTTTTTTAAACAGAGA
3' ss Score
7
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TGCCCCAATGCCATACCTGATTGGAATACACTCCAGTCTCATAGAG
Seq A exon
AGAGTGAAAAATAAATCATTGGAAGATGTGGTTATGTTAAATGTTGACACAAACACATTAGAATCACCATTTAATGACGTGAACAGCCTGCCCAGTGATGTG
Seq C2 exon
GTCTCGGCCTTGAAAAATAAGCTGAAGAAGCAGTCCACAGCTACGGGAGATGGAGTGGCTCGGGCCTTTCTGAGGGCGCAGGCAGCTTTGTTTGGCTCCTACCGAGATGCTCTGAGATACAAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063_MULTIEX2-4/6=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(20.3=100)
A:
PF0214116=DENN=PD(23.0=50.0)
C2:
PF0345514=dDENN=PU(40.3=64.3)
Main Skipping Isoform:
ENSRNOT00000043907fB4030
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAATGCCATACCTGATT
R:
GGCTTGTATCTCAGAGCATCTCG
Band lengths:
170-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]