DreEX6099165 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23381199-23404250:+
Coord C1 exon
chr22:23381199-23381244
Coord A exon
chr22:23382288-23382389
Coord C2 exon
chr22:23404125-23404250
Length
102 bp
Sequences
Splice sites
3' ss Seq
AAAGTGTGTTGCATTTCCAGAGA
3' ss Score
6.05
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TGCACCCATGCCATATTTGGTCGGAGTTCATCTCAGCCTTTTAGAG
Seq A exon
AGAGTAAAGAGCAGATCCCTGGAGGATGTGGTCATTCTGAACGTGGACACAAACACCCTGGAAAGCCCCACAGATGACCTGCACAACCTGCCTAGTGATGTG
Seq C2 exon
GTGTCGAGTCTGAAGAGTAAGCTGAAGAAGCAGTCCACGGCGACCGGCGCTGGTGTGGCCCGGGCCTTTCTGCACGCTCAGGCCGCGCTCTTCGGATCCTACCGGGACGCCCTCCGATATAAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868-'13-21,'13-17,14-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.3=100)
A:
PF0214116=DENN=PD(9.4=50.0)
C2:
PF0345514=dDENN=PU(40.3=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCCATGCCATATTTGGTC
R:
GGTTTATATCGGAGGGCGTCC
Band lengths:
170-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]