GgaEX6043488 @ galGal4
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr8:2410596-2421233:+
Coord C1 exon
chr8:2410596-2410641
Coord A exon
chr8:2412170-2412271
Coord C2 exon
chr8:2421108-2421233
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTTTCACTTTGCAGAGA
3' ss Score
10.06
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TGCACCCATGCCTTATCTAATTGGCGTCCACTTAAGCTTAATAGAG
Seq A exon
AGAGTGAAAAATAGATCACTGGAAGATGTGGTTTTGCTAAATGTTGACACAAACCATCTAGAAAACCCTTTTAATGACCTGAACAACCTACCCGGTGAAGTG
Seq C2 exon
GTCTCGGCCCTGAAAAATAAACTGAAAAAGCAGTCTACAGCTACGGGTGACGGAGTAGCCAAGGCGTTTCTTCGGGCGCAGGCATCACTGTTTGGATCCTACAGAGATGCACTGAGATACAAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'12-18,'12-17,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(7.5=100)
A:
PF0214116=DENN=PD(8.5=50.0)
C2:
PF0345514=dDENN=PU(40.3=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCATGCCTTATCTAATTGGC
R:
TGGCTTGTATCTCAGTGCATCT
Band lengths:
170-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]