HsaEX6035787 @ hg38
Exon Skipping
Gene
ENSG00000213047 | DENND1B
Description
DENN domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr1:197595208-197611976:-
Coord C1 exon
chr1:197611931-197611976
Coord A exon
chr1:197607073-197607174
Coord C2 exon
chr1:197595208-197595333
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAATTGTGTTTTTTTTATAGAGA
3' ss Score
7.23
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TGCCCCAATGCCATACCTGATTGGAATACACTCCAGCCTCATAGAG
Seq A exon
AGAGTGAAAAACAAATCATTGGAAGATGTTGTTATGTTAAATGTTGATACAAACACATTAGAATCACCATTTAGTGACTTGAACAACCTACCAAGTGATGTG
Seq C2 exon
GTCTCGGCCTTGAAAAATAAACTGAAGAAGCAGTCTACAGCTACGGGTGATGGAGTAGCTAGGGCCTTTCTTAGAGCACAGGCTGCTTTGTTTGGATCCTACAGAGATGCACTGAGATACAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047_MULTIEX1-12/15=11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.3=100)
A:
PF0214116=DENN=PD(9.4=50.0)
C2:
PF0345514=dDENN=PU(40.3=64.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAATGCCATACCTGATT
R:
GGTTTGTATCTCAGTGCATCTCTGT
Band lengths:
170-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains