BtaEX0001148 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:78480806-78497615:-
Coord C1 exon
chr16:78497570-78497615
Coord A exon
chr16:78492870-78492971
Coord C2 exon
chr16:78480806-78480931
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAATTGTGTTTTTTAAACAGAGA
3' ss Score
7
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TGCCCCCATGCCGTACCTGATTGGAATACACTCCAGCCTCCTAGAG
Seq A exon
AGAGTGAAAAATAAATCACTGGAGGATGTGGTTATGTTAAATGTTGACACAAACACTTTAGAATCACCGTTTAATGACTTGAGCAGCCTTCCAAGCGATGTG
Seq C2 exon
GTCTCGGCCCTGAAAAATAAACTGAAGAAGCAGTCCACAGCTACGGGGGATGGAGTAGCCAGGGCCTTCCTCAGGGCACAGGCGGCTTTGTTTGGATCCTACAGAGATGCTTTGAGATACAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037661-'16-27,'16-24,17-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(8.3=100)
A:
PF0214116=DENN=PD(9.4=50.0)
C2:
PF0345514=dDENN=WD(100=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCCGTACCTGATTGGAA
R:
TGTATCTCAAAGCATCTCTGTAGGA
Band lengths:
162-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development