GgaEX0027619 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9808992-9825828:-
Coord C1 exon
chr17:9825728-9825828
Coord A exon
chr17:9816831-9816876
Coord C2 exon
chr17:9808992-9809093
Length
46 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCCTCCTCTTTGCAGTGC
3' ss Score
10.62
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTAACTGCTTGCATTCATGGATCTGCAGCTATGCTCTACCCAATGTTCTGGCAGCACGTTTACATTCCTGTTCTGCCCCCACATCTCTTGGACTACTGTTG
Seq A exon
TGCCCCAATGCCCTACCTCATTGGAATACATTTAAGTTTGATGGAG
Seq C2 exon
AAAGTTAGAAATATGGCCCTGGAAGATGTAGTGATTCTTAACGTAGACACCAACACACTGGAAACCCCTTTTGATGACCTTCAGAGCCTACCTAATGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(18.1=100)
A:
PF0214116=DENN=FE(8.2=100)
C2:
PF0214116=DENN=PD(9.3=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCAATGTTCTGGCAGCAC
R:
GGGTTTCCAGTGTGTTGGTGT
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]