RnoEX0027141 @ rn6
Exon Skipping
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9974299-9974686:+
Coord C1 exon
chr9:9974299-9974379
Coord A exon
chr9:9974484-9974549
Coord C2 exon
chr9:9974633-9974686
Length
66 bp
Sequences
Splice sites
3' ss Seq
CAGTTACTCCTATGCCCCAGGAC
3' ss Score
5
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTCACCGAGGCTGAAGAACTCCTACAGAACTTGCAGCAACACCCCTATCTTGGACCCGGTTTTTCAGGGGGACCAAAGACG
Seq A exon
GACAGCAGCATCACCAGCTGGAGCGAGTGCGGGATCTTGCCTCCTGCCCTGGGTAATAGCAAGCTG
Seq C2 exon
CTTTCTTGTTTTGTGGCTCCGGATGCTGCGGGCCTCCCATCTATTCCTGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050_MULTIEX2-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.8=100)
A:
PF0214116=DENN=FE(10.3=100)
C2:
PF0214116=DENN=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCGAGGCTGAAGAACTC
R:
ATTCTCAGGAATAGATGGGAGGCC
Band lengths:
135-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]