RnoEX0027516 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64509477-64529812:-
Coord C1 exon
chr4:64529712-64529812
Coord A exon
chr4:64522185-64522246
Coord C2 exon
chr4:64509477-64509577
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTATAATTTCAGTGA
3' ss Score
8.17
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGACTCTGTCTTCGCTGCTCATTCCCTGCCGCCTCTAGCATCCATCAGGTGCAAGCTGCGGACCTGCGGCGAGTGTCTGCTCCCCCCGGCTCCTTCACCAT
Seq A exon
TGAGCCTACATCACTTCTACAGAAGTTAAAGGAGCCTAGAGGTTTCTCTTTTGAAAGAACAG
Seq C2 exon
TCCCCAGTCTGTCCCAGATCGCCTGAGGATCCGCGTGAACAAAATCAGTTTACAAGACTATGAAGGACTCCACTATGACAAGGAGAAACTCCGGGAAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'34-35,'34-34,35-35
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.364 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000033268fB4095
Main Skipping Isoform:
ENSRNOT00000033268fB4099
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCGCTGCTCATTCCCTG
R:
TTTGTTCACGCGGATCCTCAG
Band lengths:
137-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]