RnoEX0027527 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64509477-64534935:-
Coord C1 exon
chr4:64534736-64534935
Coord A exon
chr4:64529712-64529774
Coord C2 exon
chr4:64509477-64509577
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCATTCCCTGCCGCCTCTAGCAT
3' ss Score
7.19
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCTGCCCTGCAAGTCGGGGGCCACGGAGAAAGGTTGCACCAATGTCGGGAAGTGATGCTTCTGACGTACAAGTCCATTCCCATGCAAGTGGACGGGGAGCCATGTAGGTTGGCGCCTGCTATGATTCGGATCTCCTTGAGGAATCAGGCCAACATGGTACAGAAGAGCAAGCGGAGAACCTCAATGCCTTTGCTCAATGA
Seq A exon
CATCCATCAGGTGCAAGCTGCGGACCTGCGGCGAGTGTCTGCTCCCCCCGGCTCCTTCACCAT
Seq C2 exon
TCCCCAGTCTGTCCCAGATCGCCTGAGGATCCGCGTGAACAAAATCAGTTTACAAGACTATGAAGGACTCCACTATGACAAGGAGAAACTCCGGGAAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.091 C2=0.049
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000033268fB4099
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCTGCTATGATTCGGATC
R:
TTTGTTCACGCGGATCCTCAG
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]