MmuEX0014435 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36975147-37000241:-
Coord C1 exon
chr6:37000042-37000241
Coord A exon
chr6:36994859-36994921
Coord C2 exon
chr6:36975147-36975247
Length
63 bp
Sequences
Splice sites
3' ss Seq
CATTCCCCTGCCGCCTCTAGCAT
3' ss Score
6.98
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCTGCCCTGCAAGTTGGGGGGCACGGAGAAAGGCTGCACCAGTGTCGGGAAGTGATGCTTCTGACTTACAAGTCCATTCCCATGCAAGTGGACGGGGAGCCATGTCGGTTGGCACCTGCTATGATTCGGATCTCCTTGAGGAATCAGGCCAACATGGTACAGAAGAGCAAGCGGAGAACCTCGATGCCTTTGCTCAATGA
Seq A exon
CATCCATCAGGTGCAAGCTGCGGACCTGCGGCGAGTGTCTGCTCCCCCCGGCTCCTTCACCAT
Seq C2 exon
TCCCCAGTCTGTCCCAGATCGCCTGAGGATCCGTGTGAACAAAATCAGTTTACAAGACTATGAAGGACTCCACTATGACAAGGACAAACTCCGGGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.119 A=0.091 C2=0.029
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCAAGCGGAGAACCTC
R:
TCCCGGAGTTTGTCCTTGTCA
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types