HsaEX0019441 @ hg19
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137206612-137237314:-
Coord C1 exon
chr7:137237115-137237314
Coord A exon
chr7:137230646-137230708
Coord C2 exon
chr7:137206612-137206712
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCATTCCCTGCTGCCTCTAGTAT
3' ss Score
6.49
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCAGCCCTGCAAGTTGGGGGCCATGGAGAGAGGCTACACCAGTGTCGAGAAGTCATGCTTCTAACTTACAAATCCATCCCCATGCAAGTGGATGGGGAGCCCTGTAGGTTGGCCCCAGCTATGATTCGGATCTCCCTGAGGAATCAGGCCAACATGGTACAGAAGAGCAAGAGGAGAACATCCATGCCTTTACTCAATGA
Seq A exon
TATTCATCAGGTGCAAACTGCGGACCTGCGGCGAGTGTCTGCTCCCCCCGGCTCCTTCACCAT
Seq C2 exon
TCCCCAGTCTGTCCCAGATCGTCTGAGGATCCGGGTGAACAAAATCAGTTTACAAGACTATGAAGGATTCCACTATGACAAGGAGAAACTCCGAGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680-'31-31,'31-30,32-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.136 C2=0.043
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGCCCCAGCTATGATTC
R:
TTGTTCACCCGGATCCTCAGA
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)