HsaEX0019441 @ hg38
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr7:137521866-137552568:-
Coord C1 exon
chr7:137552369-137552568
Coord A exon
chr7:137545900-137545962
Coord C2 exon
chr7:137521866-137521966
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCATTCCCTGCTGCCTCTAGTAT
3' ss Score
6.49
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCAGCCCTGCAAGTTGGGGGCCATGGAGAGAGGCTACACCAGTGTCGAGAAGTCATGCTTCTAACTTACAAATCCATCCCCATGCAAGTGGATGGGGAGCCCTGTAGGTTGGCCCCAGCTATGATTCGGATCTCCCTGAGGAATCAGGCCAACATGGTACAGAAGAGCAAGAGGAGAACATCCATGCCTTTACTCAATGA
Seq A exon
TATTCATCAGGTGCAAACTGCGGACCTGCGGCGAGTGTCTGCTCCCCCCGGCTCCTTCACCAT
Seq C2 exon
TCCCCAGTCTGTCCCAGATCGTCTGAGGATCCGGGTGAACAAAATCAGTTTACAAGACTATGAAGGATTCCACTATGACAAGGAGAAACTCCGAGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.136 C2=0.049
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGCCCCAGCTATGATTC
R:
TTGTTCACCCGGATCCTCAGA
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development