DreEX0003577 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4619635-4626913:-
Coord C1 exon
chr4:4626714-4626913
Coord A exon
chr4:4622661-4622723
Coord C2 exon
chr4:4619635-4619735
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTGTGGCTGCGCTGACGCAGCAT
3' ss Score
3.2
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GCGGCGCTGCAGGTTGGTGGTCATGGGGATCGTCTCCATCAGTGTCGAGAGGTGCTCATCACCACCTTCAAGACTCTGCCAGTGCAGGTAGATGGAGAGCCGTGCCGTCTGGCGCCCTCCACCCTGCGCATCTCTCTGAGGAACCAGGCCAACATGGTGCAGAAGAGCAAGAGACGCACATCTGTACCGCTGCTCAATGA
Seq A exon
CATTCAGAAAGTGTGTGCAGCCGACCTGCGCCGCCTCTCTGCTCCCCCAGACTCCTTCTCTGT
Seq C2 exon
CCCTCACGCCGTTCCAGAGCGCCTGCGTCTGCGTGTCAACCGCATCGGTCTGCAGGACTACGACAGCATGCAGTTCGATAAGGAACGTCTGCGCGACATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTCTGAGGAACCAGGCC
R:
CGAACTGCATGCTGTCGTAGT
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]