BtaEX0011205 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:101995813-102030541:-
Coord C1 exon
chr4:102030342-102030541
Coord A exon
chr4:102025548-102025610
Coord C2 exon
chr4:101995813-101995913
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCATTCCCTGCTGCCTCTAGTAT
3' ss Score
6.49
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GCTGCCCTGCAAGTCGGAGGCCATGGAGAAAGGCTGCACCAGTGTCGGGAGGTCATGCTGCTAACTTACAAATCCATCCCCATGCAAGTGGATGGGGAGCCCTGCAGGTTGGCCCCGGCTATGATTCGGATCTCACTGAGGAATCAGGCCAACATGGTGCAGAAGAGCAAGAGGAGAACGTCCATGCCTTTACTCAATGA
Seq A exon
TATCCATCAGGTGCAAGCTGCGGACCTGCGGAGAGTGTCTGCCCCCCCAGGCTCCTTCACCAT
Seq C2 exon
TCCCCAGTCTGTTCCAGACCGTCTGAGGATCCGGGTGAACAAAATCAGTTTACAAGACTATGAAGGATTCCACTACGACAAAGAGAAACTCCGGGAAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.091 C2=0.029
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000026616fB2120
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACATGGTGCAGAAGAGCA
R:
CCCGGAGTTTCTCTTTGTCGT
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development