GgaEX0019480 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59640531-59654923:+
Coord C1 exon
chr1:59640531-59640730
Coord A exon
chr1:59645470-59645532
Coord C2 exon
chr1:59654823-59654923
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCATTTCCCACTGCCTATAGTAT
3' ss Score
5.27
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCTGCTCTCCAAGTGGGTGGTCATGGAGAGAGGTTGCATCAGTGCCGTGAGGTGACGCTTTTAACGTACAAGTCTATCCCCATGCAAGTGGATGGTGAACCTTGTCGGTTGGCTCCCTCACTCATTCGCATCTCCTTAAGGAACCAAGCCAACATGGTGCAGAAGAGCAAGAGGAGAACATCCATGCCTTTGTTGAATGA
Seq A exon
TATCCATAAAGTGCAGTCTGCTGACCTGAGGAGAGTCTCAGCTCCCCCCGATTCCTTCACTGT
Seq C2 exon
TCCTCATTCCATCCCTGATCGCCTGCGGATCAGAGTGAACCGGATTAATTTGCAAGAATATGAGGGGCTACATTATGACAAGGAAAAACTCCGTGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'22-23,'22-22,23-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.134 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=PD(20.9=49.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGGTGAACCTTGTCGG
R:
AGGCGATCAGGGATGGAATGA
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event