RnoEX0028277 @ rn6
Exon Skipping
Gene
ENSRNOG00000015085 | Dmpk
Description
DM1 protein kinase [Source:RGD Symbol;Acc:1309825]
Coordinates
chr1:79993040-79994015:+
Coord C1 exon
chr1:79993040-79993303
Coord A exon
chr1:79993552-79993722
Coord C2 exon
chr1:79993930-79994015
Length
171 bp
Sequences
Splice sites
3' ss Seq
ACTGCCATGTGTCCACTCAGGTG
3' ss Score
8.73
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
Exon sequences
Seq C1 exon
GAACACTTGTCTCTGCCTCGGGCAGACATGGGTGTCCCTGAGGAAGCTCAGGACCTCATTCGTGGGCTGCTGTGTCCTGCTGAGATAAGGCTCGGTAGAGGTGGGGCAGGTGACTTCCAGAAGCATCCTTTCTTCTTTGGCCTTGATTGGGAGGGTCTCCGGGACAGCGTGCCCCCCTTCACACCAGACTTCGAGGGTGCCACAGACACATGCAATTTTGATGTGGTGGAGGACCGGCTCACTGCCATGGTGAGCGGGGGCGGG
Seq A exon
GTGTGAGGACACATAGGTGACCAGTCCCCAAGACAGTGAGTGAGGTCCCACTCATCATTACTAAAATGGAACTCGGGGGCTGGGCTCTTGACCCAGCCTGGAATATGCTGGAGGACTTCCTGGAGGAGGAAACTGAGCTAAGCCCAGAAGGATGCCGAGGTCCTTTCTCAG
Seq C2 exon
GAGACACTGTCCGACATGCAGGAAGACATGGCACTCGGGGTGCACCTGCCTTTTGTGGGTTACTCCTACTCTTGCATGGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015085-'14-17,'14-16,15-17
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.172
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(16.4=53.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000020428fB4229
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAAGCTCAGGACCTCA
R:
CTGCATGTCGGACAGTGTCTC
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]