RnoINT0048370 @ rn6
Intron Retention
Gene
ENSRNOG00000015085 | Dmpk
Description
DM1 protein kinase [Source:RGD Symbol;Acc:1309825]
Coordinates
chr1:79993040-79994015:+
Coord C1 exon
chr1:79993040-79993288
Coord A exon
chr1:79993289-79993929
Coord C2 exon
chr1:79993930-79994015
Length
641 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GCCCTGTCCCTCTTCTGCAGGAG
3' ss Score
11.39
Exon sequences
Seq C1 exon
GAACACTTGTCTCTGCCTCGGGCAGACATGGGTGTCCCTGAGGAAGCTCAGGACCTCATTCGTGGGCTGCTGTGTCCTGCTGAGATAAGGCTCGGTAGAGGTGGGGCAGGTGACTTCCAGAAGCATCCTTTCTTCTTTGGCCTTGATTGGGAGGGTCTCCGGGACAGCGTGCCCCCCTTCACACCAGACTTCGAGGGTGCCACAGACACATGCAATTTTGATGTGGTGGAGGACCGGCTCACTGCCATG
Seq A exon
GTGAGCGGGGGCGGGGTACGTACCTGCAGTTCCTGATTGGTTGAGGGGACTTCCCTAACCTCTTCCATAAAATTGGGGTGATTGGCCAGATGTGGTGGTGCATACCTTTAACCCCAGAACTTCATAGGCAGAGGCAGGGGGATCTCTGGTGACTCCAGGCCAGTCAGGGTTACACAGTGAGACCCTCTCTTGAAAAAGAAAGTGCTGATGGCCTTTCCAGGTCCCAAATCATTATCCTAGAGCACTGCCATGTGTCCACTCAGGTGTGAGGACACATAGGTGACCAGTCCCCAAGACAGTGAGTGAGGTCCCACTCATCATTACTAAAATGGAACTCGGGGGCTGGGCTCTTGACCCAGCCTGGAATATGCTGGAGGACTTCCTGGAGGAGGAAACTGAGCTAAGCCCAGAAGGATGCCGAGGTCCTTTCTCAGGCGAGTGCTCTCAGCGTTTAACAATAGCTTCTGCCCTGGGCCCTGTCAGAGAGAAAAGTCTGGTACGGGCAGAGCCCCGAAGGAAGCAACAGTACAGAAGAGAAAATGAGGGAGTTGTTTAATGGGGGCAGTTATGCCATGAACATAGAGGGGCGAAGGGCCATCTCAGATAACTGCTAGCCACACAGCCCTGTCCCTCTTCTGCAG
Seq C2 exon
GAGACACTGTCCGACATGCAGGAAGACATGGCACTCGGGGTGCACCTGCCTTTTGTGGGTTACTCCTACTCTTGCATGGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015085:ENSRNOT00000020428:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.172
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(16.4=53.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACTTGTCTCTGCCTCGG
R:
TTGAGGCCATGCAAGAGTAGG
Band lengths:
334-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]