BtaINT0049899 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53764294-53765335:-
Coord C1 exon
chr18:53765072-53765335
Coord A exon
chr18:53764380-53765071
Coord C2 exon
chr18:53764294-53764379
Length
692 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
TCTGTGTTTCTCTTGCCTAGGAG
3' ss Score
10.14
Exon sequences
Seq C1 exon
GAGCACCTCTCTCTCCCGCTGGCCGACACAGGCGTCCCCGAGGAGGCTCGAGACCTCATCCAGCAGCTGCTGTGTCCCCCGGAGGTGCGCCTGGGCCGGAACGGAGCAGGGGATTTCCGGAAGCATCCTTTCTTCTTTGGTCTTGAATGGGACAGCCTCCGAGACAGCGTTCCCCCTTTCACGCCAGATTTCGAGGGTGCCACGGACACGTGCAACTTCGATATGGTGGAGGACGGGCTCACTGCCATGGTGAGCGGGGGCGGG
Seq A exon
GTAGGTACCTGCGACCCCAGCTCTGCAGAAGGTACCCCTCATACCTCCGTCATAACACTGAGGTTAGGAGAGTACCCTCCTCCTGGGGTCCTGAAATAAGTGCTTCCCCAGAACCCCTGCTCTGTGGGGGCCGAGTACTGGGAAGCCAGCAGTGACCTAGACTCACAGTCCAGTGGGAGACCCAGACTTGTCCCTGACAGTGACGCCCCAGAGAGATCAGGTCTGAGACAGGCGGGGAGGTGCAGGGGGCGCACCTCCTGATGCAGCATGAAAGGTCCTGGAGGGCTTCCTGGAGGAGGGGGCTACGTGACCTGGAAGGATGAGAGGTGAGAAAGCACCATAGAGGAACCCCCCTCCCTTCCTTAGGCCTTCTCTCCCTCAGCTGTTGGTACAAGCTCTCCCAGGCTTGCTCTGTCTGACTGCCCTTGTACTGGACACTACTGGGGACACTTATGGACCAAATCAGCCCTGGTCCCCACCCTCCTCTACTTACAGTTAGGAGAAGATATACCTTTACTGTGGCAAGTGCCCTGAAGGAAGCAGCAGGATGTAGTAAAATTACGTGGAGTCCACTTTGGATAGACCCCGGGCTGGGGTGGGGAGTGGTGGGCACTTCAGCCAACACTGGGAATGGGTGAGGGGCCAGTCCTGACAGCTGCTGCTCACCTCACATCTGTGTTTCTCTTGCCTAG
Seq C2 exon
GAGACGCTGTCAGACATGCAGGAAGGCATGCCGCTGGGCGTCCACCTGCCTTTCGTGGGCTACTCCTACTCCTGCATGGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347:ENSBTAT00000017759:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.345
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(16.4=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCTCTCTCCCGCTGG
R:
GGCCATGCAGGAGTAGGAGTA
Band lengths:
342-1034
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development