DreINT0009063 @ danRer10
Intron Retention
Gene
ENSDARG00000074914 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr10:358628-359603:-
Coord C1 exon
chr10:359416-359603
Coord A exon
chr10:358706-359415
Coord C2 exon
chr10:358628-358705
Length
710 bp
Sequences
Splice sites
5' ss Seq
GTCCTGTAG
5' ss Score
-27.91
3' ss Seq
GTGTGTGTGTGTGTGTTCAGGAG
3' ss Score
9.04
Exon sequences
Seq C1 exon
AGCGCTCTGAGCGTCTGGGCTCTGGAGGATCTGCAGACTTCAGGAGTCATCCGTTCTTCAGTGGCCTAGACTGGAGCTCTCTGCATCTGCACCCTCCGCCGTACCGTCCAGACGTCTCCAACGCCACAGACACTTCAAACTTCGATGTGCTGGACGACTGCCTCAGTGAAACGGTACCACAGCCAGTC
Seq A exon
CTGTAGAGCTTGATGAACACACAGTAATTGATGTGAAATGATTGTTGCATCATATCCCACTATTTCCAGCAGTCTGCATTTGTTCCTCCACAAAGCTGCAGTTTCCCGTGGATATCAGTGAGATCCCATAATGTGACTTCTGCAGCATTGTGCTGGATTTACTGAAGCTTACTTGTAGATAAAAGGTTCGGCAGCAGAACCACGCCTCAGTTTGCCTCCTTAACCAATCACCTACTAGCTAAAAACTTATTTAGGACAGACCAGCCCTCTAGCACTGTTCTTCTCATTCTCAAACCCACCCTCCCTCCTTCCCTCGCTTCCCATCAACAATCCTATATTCCTCTCTTCACGCCTAGGTTGAACCGGGGGGTCCAATCACTCAAAATATTAAAACACCAAAATATTACAAAGACGCTGACACTCTGAGTCTCTGGGCATCATCGTAGGACGCCCGATCAACCTACCTACCTGTTCACTGTTTATCCTCTTACTTCCCTTCCCCTTCATCCCACTGTTCTCCTACCCGCCTTTGAATCCCTACAATAAAGTCCAGCTCAAAATGTGGCGTGGTCCATGCTGGTGAATTCAAGTGTGTTTGATTTATTCATGGTTTTAAAAGTGCAAAAGGGTGCCATTCTGTGCGTACGCTCAGCCTTAGAGATAAACAGAACACACACAAGTGAACTGTGTGTGTGTGTGTGTGTGTTCAG
Seq C2 exon
GAGACTCTGTCTGATGTGATGGAGCGAGCGCCGGTCGGGGTTCATCTGGCATTTGTGGGATACTCGTACACTGCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074914:ENSDART00000114487:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(0.1=0.0),PF0043319=Pkinase_C=PU(48.1=39.7)
A:
NA
C2:
PF0043319=Pkinase_C=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGGCTCTGGAGGATCTG
R:
GGTGGCAGTGTACGAGTATCC
Band lengths:
254-964
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]