RnoEX0028540 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81130295-81133413:+
Coord C1 exon
chr2:81130295-81130526
Coord A exon
chr2:81132958-81133072
Coord C2 exon
chr2:81133237-81133413
Length
115 bp
Sequences
Splice sites
3' ss Seq
CATGGATGTTTCAACTCCAGAAT
3' ss Score
6.53
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
TGTCGGAACATTTCCTCTCATCCTATAACATTGACTGCACCGCTGAGATCAAGAAGGAACTGGTTCAATGTATGGGCTCCTTTCAGGACGGGGTAGCTGAGAAGTGCGCCGATTACTTCCAGAGGTTCCGGCGCTCTACCCACGTGACGCCCAAATCATACCTCTCCTTTATTCAGGGCTATAAATTCATCTATGAAGAAAAACACGTGGAAGTGCAGAGCCTGGCCAACAG
Seq A exon
AATGAATACTGGATTGGAAAAGCTAAAAGAAGCTTCAGAATCAGTTGCAGCCCTGAGCCAAGAATTGGCAGTAAAGGAGAAGGAACTGCAGGTGGCCAATGAGAAAGCTGACATG
Seq C2 exon
GTCTTAAAAGAAGTCACAATGAAAGCACAGGCTGCTGAGAAGGTCAAGGCTGAGGTACAGAAGGTGAAGGACAAAGCACAGGCCATTGTCGACAGCATCTCCAAGGACAAAGCCATTGCAGAAGAGAAACTAGAGGCCGCAAAGCCAGCCCTAGAAGAGGCAGAAGCTGCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-'63-63,'63-62,64-63
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(23.4=82.1),PF060089=Laminin_I=PU(15.6=24.4),PF127772=MT=PU(0.4=1.3)
A:
PF060089=Laminin_I=FE(31.1=100),PF127772=MT=FE(13.9=100)
C2:
PF060089=Laminin_I=FE(47.5=100),PF127772=MT=FE(21.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTGACGCCCAAATCATA
R:
CTCTTCTAGGGCTGGCTTTGC
Band lengths:
252-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]