RnoEX6009071 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81132958-81137614:+
Coord C1 exon
chr2:81132958-81133072
Coord A exon
chr2:81133237-81133413
Coord C2 exon
chr2:81137411-81137614
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCCCCTATTTATCAGGTC
3' ss Score
9.62
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AATGAATACTGGATTGGAAAAGCTAAAAGAAGCTTCAGAATCAGTTGCAGCCCTGAGCCAAGAATTGGCAGTAAAGGAGAAGGAACTGCAGGTGGCCAATGAGAAAGCTGACATG
Seq A exon
GTCTTAAAAGAAGTCACAATGAAAGCACAGGCTGCTGAGAAGGTCAAGGCTGAGGTACAGAAGGTGAAGGACAAAGCACAGGCCATTGTCGACAGCATCTCCAAGGACAAAGCCATTGCAGAAGAGAAACTAGAGGCCGCAAAGCCAGCCCTAGAAGAGGCAGAAGCTGCACTCCAG
Seq C2 exon
ACCATTAAGCCCTCTGACATCGCCACAGTGCGCACACTGGGCCGACCCCCTCACCTCATCATGCGGATCATGGACTGCGTGCTGCTGCTGTTTCACAGGAGGGTCAATGCAGTGAAAATTGACCTGGACAAAAGCTGCACCGTGCCTTCCTGGCAGGAATCTTTGAAATTGATGACTGCAGGAAACTTTCTCCAGAATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-'64-64,'64-63,65-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=FE(31.1=100),PF127772=MT=FE(13.9=100)
A:
PF060089=Laminin_I=FE(47.5=100),PF127772=MT=FE(21.2=100)
C2:
PF060089=Laminin_I=PD(3.3=5.9),PF127772=MT=FE(24.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATCAGTTGCAGCCCTGA
R:
TTTCAAAGATTCCTGCCAGGA
Band lengths:
248-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]