HsaEX6097398 @ hg38
Exon Skipping
Gene
ENSG00000039139 | DNAH5
Description
dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr5:13765976-13769615:-
Coord C1 exon
chr5:13769501-13769615
Coord A exon
chr5:13768960-13769136
Coord C2 exon
chr5:13765976-13766179
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTTATATTGAATTAGGTC
3' ss Score
7.37
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
Exon sequences
Seq C1 exon
AATGAATACTGGATTGGAAAAGCTCAAAGAAGCTTCAGAGTCTGTTGCAGCCTTGAGTAAAGAACTGGAAGCGAAAGAAAAGGAGCTACAAGTGGCCAACGATAAAGCCGACATG
Seq A exon
GTCTTAAAAGAAGTGACAATGAAAGCACAGGCTGCTGAAAAGGTCAAGGCTGAGGTACAGAAGGTGAAGGACAGGGCCCAGGCCATTGTGGACAGCATCTCTAAAGACAAAGCCATTGCTGAAGAAAAACTGGAAGCAGCAAAACCAGCTTTAGAAGAGGCAGAAGCTGCATTGCAG
Seq C2 exon
ACCATCAGGCCTTCGGACATCGCCACTGTTCGCACGTTGGGCCGCCCCCCTCACCTCATCATGCGGATCATGGATTGCGTACTGCTGCTGTTTCAAAGGAAAGTCAGTGCTGTGAAAATTGACCTGGAAAAAAGCTGTACCATGCCCTCCTGGCAGGAATCCTTAAAATTGATGACTGCAGGGAACTTTTTACAGAACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-'82-82,'82-80,83-82
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(10.9=100)
A:
PF127772=MT=FE(16.6=100)
C2:
PF127772=MT=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCAGAGTCTGTTGCAGC
R:
TCAATTTTAAGGATTCCTGCCAGGA
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains