BtaEX6076015 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59470154-59477100:+
Coord C1 exon
chr20:59470154-59470268
Coord A exon
chr20:59470717-59470893
Coord C2 exon
chr20:59476897-59477100
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTTATATTGAATTAGGTC
3' ss Score
6.76
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AATGAATACTGGGTTGGAAAAGCTAAAAGAAGCTTCGGAGTCTGTTGCAGCTCTGAGCAGAGAACTGGAAGTGAAAGAAAAGGAGCTCCAAGTGGCCAATGATAAAGCCGACATG
Seq A exon
GTCTTAAAAGAAGTGACAATGAAAGCACAGGCTGCTGAAAAGGTCAAAGCTGAGGTCCAGAAGGTGAAGGACAAAGCCCAGGCCATTGTCGACAGCATCTCTAAAGATAAAGCCATTGCTGAGGAAAAACTGGAAGCAGCAAAGCCAGCATTAGAAGAAGCAGAAGCAGCCTTGCAG
Seq C2 exon
ACCATCAAGCCTTCCGACATCGCTACTGTCCGCACGCTAGGCCGACCCCCTCATCTCATCATGAGGATCATGGATTGTGTGCTGCTGCTGTTTCAGAGGAAAGTCAATGCAGTGAAAATTGATCTGGAGAAAAGCTGCACAGTTCCTTCCTGGCAGGAATCTTTAAAACTGATGACAGCAGGGAACTTTCTACAGAATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'59-59,'59-58,60-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(10.9=100)
A:
PF127772=MT=FE(16.6=100)
C2:
PF127772=MT=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTTCGGAGTCTGTTGCAG
R:
TCCTGCCAGGAAGGAACTGTG
Band lengths:
244-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]