HsaEX6097398 @ hg19
Exon Skipping
Gene
ENSG00000039139 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:2950]
Coordinates
chr5:13762831-13769724:-
Coord C1 exon
chr5:13769610-13769724
Coord A exon
chr5:13769069-13769245
Coord C2 exon
chr5:13762831-13763010
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTTATATTGAATTAGGTC
3' ss Score
7.37
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
Exon sequences
Seq C1 exon
AATGAATACTGGATTGGAAAAGCTCAAAGAAGCTTCAGAGTCTGTTGCAGCCTTGAGTAAAGAACTGGAAGCGAAAGAAAAGGAGCTACAAGTGGCCAACGATAAAGCCGACATG
Seq A exon
GTCTTAAAAGAAGTGACAATGAAAGCACAGGCTGCTGAAAAGGTCAAGGCTGAGGTACAGAAGGTGAAGGACAGGGCCCAGGCCATTGTGGACAGCATCTCTAAAGACAAAGCCATTGCTGAAGAAAAACTGGAAGCAGCAAAACCAGCTTTAGAAGAGGCAGAAGCTGCATTGCAG
Seq C2 exon
CAATTCCCAAAAGACACAATCAATGAAGAGGTGATAGAATTTTTGAGTCCTTACTTTGAAATGCCTGACTATAACATCGAAACTGCTAAACGCGTATGTGGAAATGTAGCTGGTCTTTGTTCCTGGACGAAAGCTATGGCTTCCTTCTTTTCTATAAACAAAGAAGTACTGCCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-'60-62,'60-60,61-62=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(10.9=100)
A:
PF127772=MT=FE(16.6=100)
C2:
PF127772=MT=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTGGAAAAGCTCAAAGAAGC
R:
GCCATAGCTTTCGTCCAGGAA
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)