DreEX6039493 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9293469-9302128:+
Coord C1 exon
chr16:9293469-9293583
Coord A exon
chr16:9295379-9295555
Coord C2 exon
chr16:9301925-9302128
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCATTTTTGTTTCAGGTG
3' ss Score
12.5
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GATGAACACCGGGCTCCAGAAACTCAAGGAGGCATCTGAATCTGTTGCTGCTCTCAGCAAAGAGCTGGAGGTGAAGGAGAAAGAGCTTCAAATAGCCAATGCGAAGGCTGATATG
Seq A exon
GTGCTGAAGGAGGTGACCGTCAAGGCTCAAGCCGCCGAAAAGGTCAAAGTGGAAGTGCAAAAAGTCAAAGATAAAGCGCAGGCTATAGTTGACAGCATTTCTGCGGACAAGGCCATTGCCGAAGAGAAACTGGAGGCAGCCAGACCTGCTTTAGAAGAGGCTGAGGCAGCACTGCAG
Seq C2 exon
ACCATAAAGCCATCAGACATTGCCACGGTGCGAACTCTGGGTAGACCACCACACCTCATCATGCGCATCATGGACTGCGTGTTGTTGCTCTTCCAGAGGAGAGTGAACACAGTGAAAACTGATCCAGAGAAAAACTGCACCATGCCTTCCTGGCAAGAGTCACTCAAACTCATGACTGCTGGCAACTTCCTGGGCAGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.059
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=FE(31.1=100),PF127772=MT=FE(10.9=100)
A:
PF060089=Laminin_I=FE(47.5=100),PF127772=MT=FE(16.6=100)
C2:
PF060089=Laminin_I=PD(3.3=5.9),PF127772=MT=FE(19.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAGCTGGAGGTGAAGG
R:
AGGAAGTTGCCAGCAGTCATG
Band lengths:
250-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]