GgaEX6020570 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78581928-78583557:+
Coord C1 exon
chr2:78581928-78582048
Coord A exon
chr2:78582325-78582501
Coord C2 exon
chr2:78583354-78583557
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTGTGAATTTTCTCTTTAGGTA
3' ss Score
10.74
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
CACCAGAGTTAATAATGGGCTGGAAAAGTTGAAAGAGGCCTCTGAGTCAGTGGCTTCTCTAAGCAAAGAGCTTGAGATAAAAGAAAAGGAACTTCAGATTGCCAATGAAAAAGCTGACATG
Seq A exon
GTATTGAAGGAAGTTACTGTAAAAGCACAGGCTGCTGAGAAGGTGAAGGCTGAAGTTCAGAAAGTGAAAGACAAAGCCCAAGCTATTGTGGACAGCATCTCAGTTGATAAAGCCATTGCTGAAGAAAAGTTAGAAGCTGCTAAGCCTGCTTTGGAAGAGGCGGAAGCAGCCTTACAG
Seq C2 exon
ACAATAAAGCCTGCAGATATTGCCACAGTCCGAACACTTGGTCGACCTCCTCACCTTATTATGCGTATCATGGACTGTGTGTTACTGCTTTTCCAACGAAAATTGAACAGTGTAAAAATTGATCAAGAAAAGAGCTGTACCACCCCATCATGGCAAGAATCTTTGAAACTGATGACAGCAGGGAACTTTTTACAGAACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'62-66,'62-65,63-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(11.2=95.1)
A:
PF127772=MT=FE(16.6=100)
C2:
PF127772=MT=FE(19.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGCCTCTGAGTCAGTGG
R:
CTTGCCATGATGGGGTGGTAC
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]