MmuEX6053040 @ mm10
Exon Skipping
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28390443-28397254:+
Coord C1 exon
chr15:28390443-28390557
Coord A exon
chr15:28390708-28390884
Coord C2 exon
chr15:28397051-28397254
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTCTATTCATTAGGTT
3' ss Score
9.3
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AATGAATACTGGATTGGAAAAGCTAAAAGAAGCGTCAGAATCGGTGGCAGCCTTGAGCAAAGAACTGGCAGGAAAAGAGAAGGAGCTGCAGGTGGCCAATGAGAAAGCAGACACG
Seq A exon
GTTTTAAAGGAAGTCACAATGAAGGCACAGGCTGCAGAGAAGGTCAAAGCTGAGGTGCAGAAGGTAAAGGACAAAGCACAGGCCATTGTCGACAGCATCTCCAAGGACAAAGCCATCGCAGAAGAGAAATTAGAGGCAGCAAAGCCAGCCCTAGAAGAGGCGGAAGCCGCACTCCAG
Seq C2 exon
ACCATCAAGCCCTCTGACATTGCCACAGTGCGCACCCTGGGCAGACCCCCTCACCTGATCATGCGGATCATGGACTGTGTGCTGCTGCTGTTTCAGAGGAGGGTCAATGCGGTGAAAATTGACGTGGACAAAGGCTGCACCATGCCTTCCTGGCAGGAGTCTTTGAAATTGATGACAGCAGGAAACTTTCTCCAGAACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'59-60,'59-59,64-60=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=FE(31.1=100),PF127772=MT=FE(10.9=100)
A:
PF060089=Laminin_I=FE(47.5=100),PF127772=MT=FE(16.6=100)
C2:
PF060089=Laminin_I=PD(3.3=5.9),PF127772=MT=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGCGTCAGAATCGGTGG
R:
TTTCAAAGACTCCTGCCAGGA
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types