RnoEX0028638 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52351192-52353546:-
Coord C1 exon
chr10:52353446-52353546
Coord A exon
chr10:52352469-52352552
Coord C2 exon
chr10:52351192-52351614
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTATTCTGTTCATTAAAAAGGGC
3' ss Score
5.88
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
AGAAGCTGGCCCAATGGAAAGGTATCCCAAGACACTGGGGTGCAGGAACTACACAGCTCTGAGGTGGGACAATGTCCCAGTGGAAAGGCATCCTGAGACAG
Seq A exon
GGCAGGTCAGAGGCACATGGTAAAGGGATCAGCAGACCCAAAAGGTCCAAGGGGCGCTTCATGAAGCACTCAGCACCACCTGTG
Seq C2 exon
GCTGGGATCATTGCGGAGGCGAAACTGAAGGACCTGACACCCCCCATGCCTGTGATGTTCCTCAAGGCCATTCCGGCAGAGAAGCAAGATTGCCGAAGCATCTATGCTTGTCCTGTGTACAAGACTTGTCAACGGGGACCCACGTACGTGTGGACTTTTAATCTGAAGACTAAAGAAAACCCTTCCAAGTGGGTTCTGGCTGGTGTTGCCTTGCTTCTCCAGATTTAGCATCTTTAAGAGACCCTGGGAGAAGAAAGGAGGGTCACTCACAGCTCCCTGACAGGCAAGCGGGTGATTTCTTAGAAGAAATCATAGGCATTAAACCTCTGTAGAATTTCTCTAGAGGACTGGGAGCGCCTCAAGTGAGGCTGAGTTCTTAGAGTCAGCCCAGAAATAGTGGGGGAAACTTTGAGTAGTAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'106-102,'106-101,107-102
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0302810=Dynein_heavy=PD(1.6=35.7),PF0302810=Dynein_heavy=PU(12.8=39.3)
C2:
PF0302810=Dynein_heavy=PD(10.4=96.1)
Main Inclusion Isoform:
ENSRNOT00000005583fB4269
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTGGCCCAATGGAAAG
R:
GGCCTTGAGGAACATCACAGG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]