RnoINT0049297 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52351192-52354396:-
Coord C1 exon
chr10:52354007-52354396
Coord A exon
chr10:52351615-52354006
Coord C2 exon
chr10:52351192-52351614
Length
2392 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
CTTCACATTCTTGTTCTTAGGCT
3' ss Score
7.82
Exon sequences
Seq C1 exon
GGGGAGCTGACCATGACCAGCGAGATGGAGAACTTACAGAATGCCCTATACCTAGATGTGGTCCCAGAGCCCTGGGCCAGGAGAGCCTACCCTTCCACAGCAGGCCTTGCAGCCTGGTTTCTGGACCTGCTTAACAGAATCAAAGAGCTAGAGACCTGGACAGGGGACTTCGTGATGCCCTCAACTGTGTGGCTGACGGGCTTCTTCAACCCCCAGTCCTTCCTGACTGCCATTATGCAGTCCATGGCTCGCAAGAATGAATGGCCACTAGACCAGATGGCCCTGCAATGTGATGTGACAAAGAAGAACAGAGAGGAGTTCCGGAGCCCTCCTCGGGAAGGGGCCTACATCTATGGGCTCTTCATGGAAGGCGCCTGCTGGGACACACAG
Seq A exon
GTATAGTCTGCAGACAAGCCAGATGACACCTTGGGGTGGGCTTGATGACATGCACATTGACTGTCCGGTGCAGTGCTCTGGAATCTTTTTACCTAGGTGCCCTTTCTCTCCTTGAGAGCTTTTTTTAAACCTACCCAAGAGCAAAGGCTCAGAAGAGGGAGAAGAGTGTGCTGAAAATGAGACCCATGCCACCATGCTAGCTGGATCTGACCTTTGCACCTCCATTTATTAATCATGTGGCTATGGTCTAGTGTTTCCTCTCAAGAACCCCATTGACCAAACTGCAAAATGGGAGAACGGCCACTTGTGAAATCAAATGGGTTTCCATGTAAGAGAACTGGACTGCATCTGGTCCGCAGACAGCTGACATAGATTCCATGGTACTGATTGTTGGCCTTTTTGCTCGGATGGGAAGATATTCTGGGACTCAGAAGCCCAGGAACCACACACATCTGAGGGGAGAAGCTGGCCCAATGGAAAGGTATCCCAAGACACTGGGGTGCAGGAACTACACAGCTCTGAGGTGGGACAATGTCCCAGTGGAAAGGCATCCTGAGACAGGTGAGCCCAGGGACCAAATGGCTCTGAGGAAGCCTCAGCAGAGGCAGTCCAGATCCTGGGGGAAGGGAAACCCCGGCTGAGGAGCTCAGGAGACTCAGTCCTGCTGCTGCTTCCCCTCTCTTCAGTGCTGATCTTCCTCCAATGAGACTCACAGCAGGCAGCAAATCTCAAAAGATCAGAGGCTCCAGAGGATGGAGGGGTGGATGCAGGAGGGTTGCCTATGCTCCAGGAGCGGGCAACAGGGAATTGGACAAAGTGCAGTGATTATTATATAGGGGTTCTTGGAGGGTGGAGCTTTCTAAGAGCTTTCCAGGATGAGCACTGGTAGGATTTCAAGTCCTGAGCTTGGGGGAACTCAGGGATTGGTGCGTTTTGTTCAGATGTTTTGCCTGAAATTAGCATACTCTTGGGAGGGTCCTGTTAAGGGGCTAGAGATGACCTTTATGACAGTTAGGTCTGGGGAATGGCCTGCTGCTGCAGCTCTTCAGGCAGGGCCCTGGCCACTTTCCTGCCTTGAGGGTTTATAAAGTTTACAAAGGGAGTCCACCTCTGCGAAAGCCTTTCCCGAAGCGTAGGTGGTGTGAATATCTAACATTGGTGGCAACTGGTAATGGGCACCTCTTTCTGGAGGAATGAATATAATCCGAAACTAATATTATTAATCCTTAAGAACACTGACCCATTAACTTTTAAAGGGCTGGCTTTATGGTACGTTAAAAACAGCCTAAGTTTGGCCTGCTCATCCTCAGCTTGAACGTTCTGTCCTGTGGACAAACGGCAGTCCCTCTGTTCACTAGTTTCTATTCTCCACCATGACTCTGAAAGAACTAGAAAAGCAAATCATTTTAATACATTTCATGAAAATAAACCAAATTATTCTGTTCATTAAAAAGGGCAGGTCAGAGGCACATGGTAAAGGGATCAGCAGACCCAAAAGGTCCAAGGGGCGCTTCATGAAGCACTCAGCACCACCTGTGGTAAGGAAGAGTCCTGTGGTTGGAGAGAGTTTGGGACAGCAGCAGGTTAAGTGTCTTCCGAAAACTCGAGAAAGTCACACCTTCATTGTGCTTGCTGCAAGTCCAAGTTTATCTGGCTAACAACTCTTTTGTTCTGAGAACATCTTAGAATCCGTAGTCTTTATAGCCAATTAGATAGTGGTCTTTGATAAGTCTATTGAGCCCTCCCAGAAAACCATAAGACAACCCAATCTGAAAAGTTACGAAATAGCAAAGACCCACCTTGTCCCCAGTTACTGGAGTGGAAAAAAGTACCTCCTTACAAAAAGGTGAAATGCCCCAGAGGTAACAAAATATCAAAGAGGTAGCAACTGTGTGTAGCTATAACCTCAAATCTAAAAAGCATGTGCTGGCAGAAATTGCATTCCCTCCCCTGTCTAGAGCTCTAACATGGCATCCACCACATACTTGCCCTTCATATTCTGATAAAATGGATATATGAAAGAGGGAGAATCCATCTGAAAATAGATTAATCTGTACAGGATAGATAACCTTTAGAGCTCAACATCAGCAATTGACTTTAAAGCTAGTTGTAATATCACATGCTTATAATCCTAGCACTCAGGAAGCTGGCAGAAGAATGAGTTTAAGTACAGCCTCAGTTACACAGCAAGACTTCCCTTTCAAATAAATGAAGAAACAAAAGAGATGATTTATGTTAAGCACAAAGACATGTATTTTTAAAGTAGGAGAGAGTTTCCATTGTAGGTTATTGGGAGAACCCTGAAGAGTGGGAGGGTTCGGCCAGAACCTGGGGAATGCTGGCTGCCTGGACTCTGGGACTAAAGTGGCTCTCTTCACATTCTTGTTCTTAG
Seq C2 exon
GCTGGGATCATTGCGGAGGCGAAACTGAAGGACCTGACACCCCCCATGCCTGTGATGTTCCTCAAGGCCATTCCGGCAGAGAAGCAAGATTGCCGAAGCATCTATGCTTGTCCTGTGTACAAGACTTGTCAACGGGGACCCACGTACGTGTGGACTTTTAATCTGAAGACTAAAGAAAACCCTTCCAAGTGGGTTCTGGCTGGTGTTGCCTTGCTTCTCCAGATTTAGCATCTTTAAGAGACCCTGGGAGAAGAAAGGAGGGTCACTCACAGCTCCCTGACAGGCAAGCGGGTGATTTCTTAGAAGAAATCATAGGCATTAAACCTCTGTAGAATTTCTCTAGAGGACTGGGAGCGCCTCAAGTGAGGCTGAGTTCTTAGAGTCAGCCCAGAAATAGTGGGGGAAACTTTGAGTAGTAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(18.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(10.4=96.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]