GgaINT0127401 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1186135-1193371:+
Coord C1 exon
chr18:1186135-1186524
Coord A exon
chr18:1186525-1193081
Coord C2 exon
chr18:1193082-1193371
Length
6557 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACCTCTTCTTTCCTTTGCAGACC
3' ss Score
13.84
Exon sequences
Seq C1 exon
GGAGAACTGACCATGACAAGTGACATGGAGAACTTGCTGAATGCCCTGTTCTTGGACATGGTGCCTGAGTCCTGGGTGAAGAAGGCTTATCCTTCCACGGCCAGCCTGGGAATGTGGTTTGCTGACCTCCTCACTCGCATCAAGGAGCTGGAGACATGGACAGGAGACTTTTTGTTGCCTTCTTCAGTGTGGCTTGCTGGATTCTTCAATCCTCAGTCATTCCTGACAGCCATCATGCAGTCCACAGCCAGAAAGAACCAGTGGCCTTTGGACAAGATGACCTTGCAGTGTGATGTGACAAAGAAGAACCGGGAAGATTTTGCCAGTCCTCCTCGGGAAGGGGCTTACATCCATGGTTTGTTCATGGAGGGTGCACGTTGGGATGCACAG
Seq A exon
GTGAGCTCACCAAGGCTGTTATGTTAGTAGATGGCTTGGGCATTATGCCCTCATTATTTGGTATTGTACTCCAAGAAACTTCCCAGCCCAGGCAGACATTTGTCTAAAGTAGATGTCTGTGCTGCCTCTGTAGGACCGGGAAAGAAGTGGTCCCTCCTCTGCAGCCTTGGATGCAGATCCAGGATGGTCAGATGGATCATCATTTCATGGTGATAAGGGAGTTCAAGCTGGCCATATCATGGTGTTGCTAAAAGGAGAAAACATGGGCTTCTCTCAAGACTTAGTTGTCCCTGCAGCTTACCATGGTTGTGATTTCACTGCTGCCTTCAAAAGTTACATGACACTTTTAGTGTCACTTCTCTGACCCCTGTGTAGTGGGGAGAGAGGACCCTGATTTCCCACATCTTCATGTTGTTATGGGTTGTATAGCTAAATGGGTTGTATGTGGCAACTCCAGACTGCCGTCCTTCTGCTGCTGAGTGGTCCGGGATGTCACCTGCATAAATAGGGCTTGTGACCAAAATTGAGTAGCATCCTTCAGCCATCCCCTGAGGGTGTCAGGTAAAGCTGTCACGAAGCTCTAACCTGCATGATCCAGGCAGGCTCAGAGTGTGGTGTGGGAGAGGCAGGTCCTGGACAAGCAGACAGCAGAGGTGCCCCTTACTTTTCTTCCCTTTTCTGGATGTGGCCCAATGCCCTTCAGCTGTGACACAGCCAGCCCCAGGGCAGCCAGGGTGAGGGGGAGCCTGGAGAGAGCACACGCAGGGAGGTATGCTCACATGCTGCTTCCTGCCCACGTAGCTTACAGTACTCTTCTTAGAGCACGCCTGGTGCTGCAGCATCCCAGTGGAACACAGCTGTCCCTGTCATCCCTTCTGACAGTTGTCAGCTGTTAGGAGTTCAGTTTGCCATTAGGAGAGCCATTAGGCTGACAAATCCCCACTGGGCTTGGTCCTCTGCATTGCCTGGCCTGTTAGTACCACAAATCCCAATTTGTGCTGCGCATGAGAATCAAATGACAGTGATTCATGCAGCTCATCCTCTGGGCAGCCAGTGCTGCCAGTGATGTGTGAGAGAGTGAGGGCTGATCAAAGTGGGTCACCCAGAACTTACTTATCTGTGTCAAGTTTGCCCTCTTTCAGGAGCAGGCTTTGCTTTCAGAGGCAGCTCTTCAGAGCCCTAACCTTGAAGATCCTCTGTTATCTGCTCTGGGGCTTAGTAGTAGGGTGCTGACTAGAGGGACCACGCCTGTTGTATGCTGCATCCCATCCTGGCCCTGCAATTCAAATATAATACTCTCTATTTATTTTTCAGCTCTCTCTGTGCAATAGTTTTCCACGAAGGATAGGAAATTAGGCAGTGAGTAGAACTCAAGTACTGATGGCATCCAGTGCATTTTATCACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTACGTTTGGGTCTGGAAAGCCACTGGCAGTCCTTTTCATTGCCAAAGTCTCTGTCAGAAGGTTACCATAAAGATGAGTAATAGGGTCAGGTCTTCTGCCTTGTTGGTTTTGGCTCTGCTGACAACAGAAGTCACTGCAGCAGCGTGAGGACCAGCCTGGTCCATTGCCCAAGCCCTGATCCTACAGCTCCCTGCCCGTTCCTTTCTTACGCCTTTGGTGTGGCTGCCATACAAAAACCCTTGCAACTCTTGGAGGTCACAGCCCCCTGCTATAGGGAACACTGGATTTCAGTTACCCTCAAGAAATAACATTTTAAACTGATCAAATTGGCCAGACACAGCAGAATAGAAGAAGTTTTAAAAGACATCCCAGTCTTGCATGTCAAATGCTCCATTAAAAACAAATTCCAATGACTTCTGTTTCCTATTACCATCATTACCACCATTACTAGAAAGTGAGTGGGTTCTGCCAAGGTTATCACCTCTCCCAGGTGATAATAAAAGTGAAGAATGGGAAGTTTCAGTGGTGCAAAGCTAGAAGTCTTTTGGGGAGCACGTGGCTTCTCTCCTCTGTCCCCTCCAATATCTTGTATGGGTGACTGCTTTCAGCAGTGCAGTTTCTCTTCAGAGGCCATCTAGACTTTACTAAATGTGTTTTTCTGGTTACATTTTCCTTGAGATTGAAAGATACTGAGCAATTACATTTATAGAACCATTCATAATCTCTGGGTATCATGCTTCAATTTATTTCAGTGAAGAAAAGAATATTTTCACATGTTGCTCCAAACACTGAAATATCATTTCCACCCCTTGGAACTATTCATTTTACCTGCTATCCAGTGAGCACCAGTATACATTAATGGATGCAGAATTATTAAAACTGCTGCACAGTTATTTTGGGTTGCACACTCCTTCCAAATTAATCCTGTGGTAGGAATGGCAGGTCATGGTTAGAGGAACTCTGCTGGGGAACACCTTCACTTTTAAAATAATATTTCACAGTTAGATTTTGACTCCAGAAGGGGGGAAAATTCCCTCCGTGTTCTCCTACTCACATTTTTCTATTTATTTAAACATTTATGTTTGCCCTTGGGTGTCTTAAATTTATAAAACATTCATTACTAAACAGCAGGCAGCTATTAAATGAAATGAAACCAAGCAGGTTATTTTGGGTCCGCGTGATCTGTTGCTGTAGCACCATTAAAGTCAGTGGGGCTCAGTGAGAGATAGTCAGACGGGTGGCACTGAGACAATTCGTCTCAAGCCCTGGGATTCCTGGCAGTATTGCTCCCCACCGTGGAGGGTTTGATGCTGGGTGTGTGCCCTGAGCATGCTGTGCCTCTGTCATACCACACTGCCTAGACCATGGGTCCAACCTTTGGGCTTGCCTGGCCTGCACTGAGTGAGGAGAGATTTCCTGCTTAACCAATGTAATGGCCCTTTTGTGATGGTATTGGTGCATCAATGGACAAAGGAGGAGCCACTGATGTCATCTATCTGGACTTCAGTAAGGCCTTTGACAGTGGTACCCCACAACGTCCTTCTCCCCAAATTGGAAAGAGATGGATTTGATGGGTGGAGTGTTCAATGGACAAAGAACTGGCTGCGGGATCGAGTCCAGAGAGTGGTGGTCAATGGTTCCATGTCTGGATGGAGATCAGTGACGAATGGTGTCCCCCAGGGGTCAGTGCTGGGACCGATACTCTTTCATATCTTCATCAGTGACACTGACAATGGGGTTGAGTGCACTCTCAGGTTCCGTGGACTTTCTAAGGCCAGTCCTATGCAAAGCACCAGTTTTCAACCAGCAGAGGGGCTTAGAAGGGACAGTCTCTGTGGCAAGGAATAATCACAGCGTGCATTCATTTGGTGGCTGAAAGAGCTCAGCATCTTTGGGAACAGTTGCACACCACTCATTTTTTATCTGAGATGCTTCCCAGAAGCTGATATAGATGAAAACAGCATCAGTGTGCAGCTCAGCCCTGATACAGCCCAGTGCTGCAATATCTGGCCATCACAGCTGGCCTCAACCTTCTGCAGAGGCAGTGAATGCACCAAATCTTGTGCACCAGAGGCTGAAATTTGTCCTGAAGGGCTGAGATGGGATGTGATGTGGAGCGTCTGCCTGCAGCTGTCAGTAATGCCCAAGTCTGTGTGAGCTGAGGGCCGGAGCAGGGTGCGGCTGGAGCTGGGGTCTCCAGTGAAAACTGTACAAGGCAGCCGTGGAGGGGACACCTCCAAGCTGTGCCATGGACAACCAGTCCCTTATTTACAGCTGTTTGGAAAAATGAGTTATTTGGCCAATGCTTTTTCATCTGTGCCTGAGTTCTGAAACTAATCAGGGATAAAAAATTATCTCTCATTTGGTTTTGCTGAACAGAGCATCATTAAGTCTTCTCCCTTGCATGCACCATGGACGGCTCTTCTCATTCCCCATCTATGGAAGCCACAAACCAGTCTCTGGATCACCTTGGAGTGATGTTCTGGCTACATTGCTGTCACATCTGGCAATATAAGACCCCTTCCCTGCAGACAGAGCCAACTCTGATAGGGAACCAAGCCATGTAGAAAGGTCAGGTGGCTTAGAGTCCTTAAGTAAGCAGTGGTGCAGATGCACCTGTGCTAAGAACATCTCAAAGAAGAGTTGATTGGGAAGGGATGTTGGCCTCTGGTTTGCTGTATGTGTTCTTGACTCCATCTGTTATCATCCCTGGCTTGAGACAGCTCTTCTGTGTCCTTTGTCTCTTTGCTGTGTGGCACTGTATTATGTCCAGTCTTCAAACTGCCTGTTGAGAAGCAGAACAGAAGTGAGGATTTCTTTAGGTGCTGAGACCCGGAGCTCCCTGAGCACAGAACAGTGGCATTTTACTGGGTGTGCTGTGGCAGTAGTTAGAGAAAATTGCTTTCAGGATGGAATTAATTTCTGATCATGAGAGCGATAAAAAATGCAAATGCAAATCAGCCCAGACATAACACAGTGATACGTTCCGTAGAGAAACCTCCAGCAGATATCAGATCTTGTTAACCCAGAAATGGGTAGAATATATCTTGGAAATTTGATTTATCATCAGTAAAATAAAAGTTCTGATCAAAATCCAACCTCAGAAATGAAAGATGTGGATTTTAAGAGCACATAGTAATGCTTGATAAATAGCTCCTTCACAAGCTATCATAAGAATTATTTAATGTTTGTTCAGCACATTGGAAATTACAAAATCCTAAATCAGAGCTGGGTTTGTCATTAGCTTAGGAGAACAGATGGTTTTAGTACAATTAAACTGAGGTGTATTGCAAGGGGGATTATTTTGCTTCACTCATTTGCACAACTAAGCAAAGTGTTGGAGAGGTTGAATCTCACCCCACAACTCTGATCTGAGAGCATTTGATATAATAACGATATGTGAAGCTAAGCTGCAGACAGAGGCAGTTTTAGCACTGAGTTTTATTTTGCTTTTCTATATTTGTTTTCATTTGCTCTCTCTAGTCTCCATTAAGCAATTTTGCAGACTTTCCTGGAAGTTGACTGATGTGGAGTGCATTTTATTGCCAGAAAGAGAAACATAAGTTGCCAGAGATACCTGAGTTAGCGGAACCAGCTCATTTCATGCCCTCGCAGCAAACCATCTTTCTCCCGGCTTGGGCAGCCTGCTGAGCAAGAGCATTGCTTTGGAGAGGATAATGTGGGCTTGTTTAAGATCATATTCCCTCAGGAACAGTCCATCTGAATCCCCTGTGGAGGTGTGAGCACCTGCGAGAATGGAAACAAGCCTGCGGTACCACCGGGGCCCCATAAATCACTTCCTCTGCTCAGTACACAGAACAGTGATGTATCCCAGGTCACACTCAAAGCTTGGTGCTGTGGTGAGTCCAGCCGGAGCCCCACTCAGGTGTCTGCAGCTGGTTCAAGCACAAGCAGTGCTTACAGAATCACAGCACCACAGAATGGTTGGGTTGGAAGGGACCTTAAAGCATCCAATTCCAGTCCCCTGCTGTGGGCTGATTGCCCCCACCAGCTCAGGTTGCCCAGGGCCCATCCATGGCCTTGGGAACCTCCAGGGATGGGGAACCCACAGCTCTCAGGGCAGCAGTGCCGGGGCCTTACACTCTGGGTAAAGAACTTCCTCCTCACATCCAACCTAAATCTCCCCTCTTTGAGTTTGAAACCACTACCCGTTGTGCACTCCCTGCCACAGTCCCACCCCAGCTCTCCTGTAGCCCCTCCAGGCAGCCTCATTCCCTATGAGGTGGTTCTGGACTGACAAGACTTGACTAAGAGCTGCACGAGAACGATGGTGCTGGATGTGGATGGGGTGTCTAGGCTGGACGCTGACATAGATAGGAACCCCCACAAATTTCTGCTGAGGTGTTTGTGGGTCTGGACACCTGGGGGGAGCAGGTATCAGTTCATACTCCTCCTCTTGGAATAAGCAAACTTGAGGGCAGTTTCTAATGAAACAGGGTAGGTGCCTGTCCAGGCCCTGCTTACCTCGGATAGGCTCAGCCACCCCTTGATCTCAAGAGAGATCTCCATTAAGACCATCTTGTATAACCATCACCATTGATCACGCATATCAGACTACAGCAGATGAAGATTTTGGCGTTCTAAGACCTCTTCTTTCCTTTGCAG
Seq C2 exon
ACCGGGATAATCACGGATGCCAGGCTGAAGGAACTAACCCCGGCCATGCCTGTCATTTTCATCAAAGCCATTCCTGCTGACAAGCAAGATATCCGTAGTGTGTACCCATGTCCCGTATACAAAACACGCCAAAGGGGACCAACTTATGTGTGGACTTTTAACCTTAAAACTCGAGAAAGCCCGTGCAAGTGGGTGCTTGCTGGTGTGGCACTGCTGCTACAGATCTAGGCTCACCAGCAGAGAGCCTCAATTAACATCCCTAACGATATCTTTCTCAGTTTTGGAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:71
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(18.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(10.4=96.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]