BtaINT0050851 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31245358-31248936:+
Coord C1 exon
chr19:31245358-31245747
Coord A exon
chr19:31245748-31248462
Coord C2 exon
chr19:31248463-31248936
Length
2715 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
TCTCGAATCCTTGTCCTCAGGCT
3' ss Score
7.2
Exon sequences
Seq C1 exon
GGAGAGCTGACCATGACCAGTGACATGGAGAGCTTGCAGAATGCCCTGTACCTGGACACGGTGCCAGAGTCCTGGGCCAGACGAGCCTACCCTACCACGGCAGGCCTGGCAGCCTGGTTTATGGACCTGCTTAACCGGATCAAGGAGCTGGAGGCCTGGACAGGAGACTTTGCCATGCCCTCGACTGTGTGGCTGACGGGCTTCTTCAACCCCCAGTCCTTCCTGACGGCCATCATGCAGTCCACGGCCCGCCGGAACGAGTGGCCCCTGGACCAGATGGCCCTGCAGTGTGACGTGACGAAGAAGAACAGGGAGGAGTTCCAGAGTCCCCCCCGGGAAGGAGCCTATGTGCATGGCCTATTCATGGAAGGCGCTCGCTGGGACACCCAG
Seq A exon
GTAGACCCGGGTTGGGGGTGGAGGGGCAAAGGGCATCAGCTGTAGGCTGATTACACACACATCACCCCTCCCGTAAAGTCCAGTTGCTAAAAGGGGCGCTCTAGAGTCTTCTGTCCTGGATAACCTCTCCTTGAGGCTGTCAACTCATTTCCCTGCAGCCACGGTCTGAAAGCATCAGTTCTTCGGCACTCAGCCTTCTTTATGGTCCAACTCTCACATCCATATGTGACTACTGGAGGAACCATAGCTTTGACTGTATGGACCTTTGTTGGCAAAGTAATGTCTGTTTTTTAATGCACCGTCAAGGTTTGTCATAGCTTTTCTTCCAAAGAACAAGCATCTTTTAATTTCATGGCTGCAGTCACCATCCGCAGTGATTTTGGAGTCCAAGAAAATAAAGTGTATCACCGTTTCCATTATTCCCCCATCTATTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTTTGAATGCTGAGTTTTAAGTCAGCTTTTTCACTCTCTTCTTTCACCTTCATCAAGAGACTCTTTAGTTCCTCATTGCTTTCTGCCATTAGGTGTCATCTTCATATCTGATGTTATTATTGATATTTCTCTCAGTAATCTTGACTCCAGCTTGTGCTTCATTCAGTTGCATTTTGCATGATGTAATCAGCGTATAAGTTAAATAAGAGGGTGACAATATAGAGCTTTGACATACTCCTTTCCCAACTCTGAATTAGACTGTTGTTCTATGTCCAGTTCTAATTGTTGCTTCTTGACCTGCATACAGGTTTTGCAGGAAGCAAGTACGGTGATCTTCTGATATTGCTATCTGTTTAAGAATTTTCCACAGTTTGTTGTGATCTGAAGGACTTCCCTGGTGGCTCAGACAGTAAAGCGTCTGTCTACAATGTGGGAGAACCAGGTTCGATCCCTGGGTCGGGAAAGATCCCCTGGAGAAGGAAATGGCAGCCCACTCCAGTACTATTGCCTGGAAAACCCCATGGATGGAGGAGCCTGGTAGGCTACAGTCCATGGGATCGCAAAGAGTCAGACACGACTGAGCGACTCCACACAGTCAAAGGCTTTAGTGTAGTCAATGAAGCAGAAGTGGATGTTTTTCTGGAATTCCTTTGCTTTTTCTATGATCCAATTCTGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCTGAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCACCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTTCAGTCGTGTCCGACTCTTCGAGACCCCATCAACTGCAGCCTACCAGGCTCTTCCGTCCATGGGATTTTCCAGGCAAGAGCACTGGAGTGGGGTGCCATTGCCTTCTCCGCTATGATCCAATGGGTGTTAGCAATTTGATCTCTGGCTCCTATGCCTTTTCTAAATCCAGCTTGTACACCTGGAAGTTCTCAGTTCACATACTATTGAAGCCTCGCTTGAAGGATTTTAAGCATTACCTTGCTAGCGTGTGAAATGAGCATAACTGTGTGGTAGTTGAACATTCTTTGGCTTTGCCCTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCAACAGACTACCTCCCATTTTTTCACTACCTTGTTTCTGAATAATAACAAAACCAAAAATAACACCTCAAAGTCTATATCCCAGAAAGTGTTGAGCAAAAAGGGAAGGGTAGGATGTCCAAAGTTCCTCTCCTCCATAAAACAAGGGCATTGGCAAAAAGAAAAAAAAAATGTATGTATTAGATATACCAAGTTCTGTCATCAGCATAAGGGGTTCAGGGTCACCTAGACAGAGGCGAGGGATCTGTGAATCTCTCTGGATGATCATCTCCCCAAAGTGTGTTCGGAAGACACTAGCGATGTGGGAGATGGATAGGTTGCAAGAAAAGGGTCCTGTGGTCAAAGTAAGTTTGGGAAACACTGGGATAAATAAGTGAAACTTTTTTCTTTACTGCCAGGTCTTCTTGTCTTCAGTGTGCATGGTAAAGCTTCAAGTACAGTGTATGGTAATACCGGTAGGCTCTGTGTCTTGCTAACCTGAAGTCCCTAGCACCTAGCATGACATCTGGCAAATAGCTGCATTCAGCATGCTTACTAAATGAATGATAAAATAAAACAGAGATTCAAGCCCTAAAGAGACTCGCTCACATATGACATATGAGCACTTTGGGAACTCTGCTTCGAGAAGATATTCAGGCTGAAAACAAGTAGAAATATGTTGTGCACCTGGTCCATTGCATGGGCCTCCCCGGTGGCTCAGTGTAAAGAACCCGCCTGCTAATGCAGGAGACGCAGGAGACAAGGCTTGGATCCCTGGGTCGGGAAGATCCCCTGGAGGAGGACGTGGCAATGCACTCCAGTATTCTTGCCTGGAGAATCGCAGGGACAGAGGAGCCTGGTGGGTTACAGTCCATAGCGTTGCACAGAGTTGGACACAACTGAAGTGACTTAGCATACACCAGTGCACGCCACCTTGGGTTGTTGAGAAAACGCTGCAAGGGGATGGGCCCTGGGGCAGCCTGGCCATCCCAGTCTCTCTCTCCTGGATCTCCCGACAGGAGCGAGGCTGCCTGTCCAGGCTCAGGGCCTGACCTGAGAGGTGCTCTCTCGAATCCTTGTCCTCAG
Seq C2 exon
GCTGGGATCATCGCCGAGGGGAAGCTGAAGGAGCTGACACCCGCCCTGCCTGTGATGTTCATCAGGGCCGTCCCTGCGGAGAAGCAGGACTGCCGCAGCGTCTACCCCTGTCCTGTGTACAAGACCCGTCAGCGGGGCCCCACCTATGTGTGGACTTTCCAGCTGAAGACTAAGGAGAAGCCATCCAAGTGGGTTCTGGCCGGAGTCGCCTTGCTTCTGCAGGTTTAGCTTTCTGCAGAACCCCCGATGAAGCAAAGTTGGGCTGGAGGCTGCCCAGAGGGACCAGTGGGTGAGGGCTAAGATCACAGCCATAGAGAAAGATAAGAAATGGACAGTCACAGTTCTGAAGAGCTCCTTTGGGAAACTCGAGAGAAGTGCCTAAAGTGAGGTTGAGCTGGAGGAGTCTGGACCTAGGAATTAGGGTAGAAGAGTTTCCTAACACTGGCCCTTTCCTAATAAAGTGATTTGCTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:80
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(18.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(10.4=96.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development