MmuINT0051266 @ mm10
Intron Retention
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65831282-65834488:-
Coord C1 exon
chr11:65834099-65834488
Coord A exon
chr11:65831787-65834098
Coord C2 exon
chr11:65831282-65831786
Length
2312 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
CTTCACATTCTTGTTCTTAGACT
3' ss Score
7.06
Exon sequences
Seq C1 exon
GGGGAGCTGACCATGACCAGTGAGATGGAAAACCTACAGAATGCCCTATATCTAGATGTGGTCCCAGAGTCCTGGGCCAGGCGAGCCTACCCTTCCACAGCAGGCCTGGCAGCCTGGTTTCTAGACCTGCTTAACAGAATCAAAGAGCTGGAGTCCTGGACAGGCGACTTCTTGATGCCCTCAACTGTGTGGCTGACGGGCTTCTTCAACCCCCAGTCCTTCCTGACTGCCATCATGCAGTCCATGGCCCGCAAGAATGAATGGCCACTAGACCAGATGGCCCTGCAGTGTGATGTGACAAAGAAGAACAGAGAGGAGTTCCGGAGCCCTCCTCGGGAAGGGGCCTACATCTATGGGCTCTTCATGGAAGGTGCCTGCTGGGACACACAG
Seq A exon
GTATAGTAATGGCATGCATGTTGACAGCCCGGTGCAGTGCTCTGGAATCTTGTTACCTAGGTGCCCTTTCTCTTCTTGAGCCTTTTTCTTTAAATCCATCCAAGAGCAAAGGTTCTGAAGGTTGCTTAAGATGAGGCCCGTGCAACCACACTAGCTGGATCTAACCTCAGCACCATCATTTACCAATCATGTGGCTGTGGTCTAGTGTTTCCTCTCAAGTGCCCCACTGACCAAACTATAAAATGGGAGAATAGCCACTGGCCTGCATCTGGTACAAAGACAGCTGACGAGGCCATGGTGCTGATGGCTGGCCTTTCTGCTTGGATGGGAAGGTATTCTGGGACTCAGAAGCCTAAGAACCACACAGATCTGAGGGGAGAAGCTGTCCCAATGGAAAGGTATCCCAAGTCACGGAGACCCAGGAACCGCACAGCTCTAAGGTGGGACAGTGTCCCGATGGAAAGGCATCCTGAGACAGGTGAGCCCAGGGACCAAATGGCTCTGAGGAAGCCTCCTCAGCACAGGCAGTCCAGCTCCCAGGGGAGGGAAACCCCAGCGGAGGAGCTCAGGAGCCCAAGCCCTCTGGCTGCTTCCTTTCTCTTCCTTGATTCTCTTTTCCCTCCAATGAGAGTCACAGCAGGCAGCAAATCTCAAAAGAGATCAGAGGCTCCAGGATGTGGAGGGATGAATCCTGCAGTGGTTGCCTATGCTCCCCAGGGCAAGCAGACAGCAGGGAGCTAGACAAAGCGCAGGGGTTCTTGGAGGGTGGAGCTTTCTACAGTAGAGATTTCCAGGAGTACTGGTAAGATTTCAAGTCCTGAACTCAGGGATTGGTGGGTTTTGTGCAAACTTTTCACCTGAAATTAGCACAATCTTGGGAGGATCCTGTTAAAGGACTAGAGATGACCTTTATCACAGTTAGGGAGGTGTGGAGGAGGGGGCCTCAGGCAGGACCCTGGCCACTTTCCCACCTTGAGGGCTTATAAAGTTTACAATGTATACAAGTTTACAAAGAGGGTCCATGGCAGGGAAAGTCTTTACTGCAGTCGAAGTGGTGTGAATATCTAACATGAATGGCAACTGGTAACGGTTACTGCATTTCTTTCCGGTGGAATGAACATAATTTGAAACTAATATTATTATAAGAACACTGAACCATATACTTTTAAAGGGCTGGCTTTATGGTATGCTAAGGACAGTCTAAGCTTGCCCTGCTCCTCCTCAGCTTGAACATTCTGTCCTGGGGACAAATGACAGTCCCTCTGTTCACTAGTTCTGTCATCCACCACAACTTACATCAACCTCTGAGAGAACTAGAAAGCCAAATCATTTTAATACATTTATGAAAACAAACCAAATTATTCTGTTCATAACAAAAGCAGGCCAGGGGCATGTGGTAAAGGGATCAGTGTCTCCCCAAGTTTCCAAGGGGTGCTTCAGGAAGCATCTAGCACATGTGGTAAGGAAGCAGAGCTGGGATCGCAGCAGGTTGTCTTCTGAAGACTCGAGAGCATCTCATCTTCAGTGTGTTTGCTGCAAGCCCAAATTTATCTGGCTAACGACTCTTTGGCTCCTGAGAACATCTTAGAATCAGTAAAAACTTTATAGCCAATTAGACAGTGGTCTTTGATAAGTCTACTAAGCCAGCCCAGAAAACCATAATCTGAAAAGTTACAAAATGGCCAAGGCCTGCCCTTGTCCCCAGTTGGGGGGAAGGGGAGGAGTCCTTCCTTGCAAAAAGTTGAAATGCCCCAGAGGTGACATGACCACATAACAAAATCTCAAAGAAGTAGCAACTCTGCTCAGCTATAACCTCAAACCCAAAGGCATGTGCTGGCAGAAACCGCACTCCCTTCCCTGACTAGAGCTTTAACATGGCATCTGCCAAAAACTTGCTCTTCATACCCTGATAAAATGGATATATGAAAAAGTAAAGAGGGAGAATCTATCTGAAAATAGATTAATCTGTACAGGATGGATAAACTTTAGAGTTCTGTATCAGCAACTGACTTTAAAGCCAGGTGTAATAGCACATGCTTAGAATCCCAGCATTCAGGAAGCTGGCAGAAAAATCCTGAGTTTAAAGTACAGCGTCAGTTACACAGCAAGACTTCCCTTTCAAATAAATAAACAAGCAAAAAAGATGATTTATGCTAAGCACAGAGAAATGTATTTTTAAATATGAGAGCTTCTCATACACTGTGGGTTATCGGGAGAACCCTGAAGAGTGGGAGGGTTCTGCCAGAACCTGGGGAAGATGGGCTGGCTGGACTCTGGGACTAAGGTGGCTCTCTTCACATTCTTGTTCTTAG
Seq C2 exon
ACTGGGATCATTGCAGAGGCGAAACTGAAGGACCTGACACCCCCCATGCCTGTGATGTTCCTCAAGGCCATTCCAGCAGATAAGCAAGATTGTCGAAGTGTCTATGCTTGTCCTGTGTACAAGACTTGTCAGCGGGGACCCACCTACGTGTGGACTTTCAATCTGAAGACTAAAGAAAACCCATCCAAGTGGGTTCTGGCTGGTGTTGCCTTGCTTCTCCAGATTTAACATCTTTAAGAGTCCTTGGGAGAAAAAAGGAGGGCCGCTCTCAGTTCCCTGACAGGCAAGTGGGTGGTGGGTGATAGATTATTATGAAGAAGTCATAAGCATTAAACCCCTGTAGAATTTCTCTAGGGAACTTGGAGGGCCTCAAGTGAGGCTGAGTTCCTCGAGAGCCCAGAAATAATGGGAGAATTCTGAGTAGTAAATTTTTCAAATAAAGTGATTTATTCAACTCTTCTAAGAACTGTTGTCATAAATAATGGTAAAGAGACCAAGACAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752:ENSMUST00000080665:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(18.3=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(10.4=96.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types