RnoEX0028680 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52593564-52597309:-
Coord C1 exon
chr10:52597157-52597309
Coord A exon
chr10:52595633-52595825
Coord C2 exon
chr10:52593564-52593803
Length
193 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTCTCCTCCAACAGCTT
3' ss Score
9.83
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTTCAACGTCACCTTTCCAAGCTCTTTGACAACATGGCTAAGATGCAGTTCCAGTTAGATGCCAGTCAGAACCCAACCAAGACAAGCCTGGGCATGTACAGCAAAGAGGAGGAATATGTGGCCTTCAGTGAGCCCTGTGACTGCAGTGGACAG
Seq A exon
CTTCTGTGGACCTTCTGAGGGAGAAGGGCCTCAAGCTAACTACCCAGCGCTTCAAAATAGGAAAGGCTTGAATCCTAGACTATTGTGAGGACCAGAAGACAGAGCAGAGGCATTGACAGCCATGACTGAGTTCAACCATTGCTTTGGAAAATTTGGGTTAAGTTATCTGTATCATTGCTTATAGGAAAAAGAG
Seq C2 exon
GTGGCTCTGACCTGCACTCAGATCTGGTGGACGACAGAGGTGGGCATTGCATTTGCCAGGCTGGAAGAAGGCTATGAGAATGCCATGAAGGACTACTATAAGAAGCAAGTGGCCCAACTCAAAACCCTTATCACCATGCTAATCGGGCAGCTCTCCAAGGGGGACAGGCAGAAGATCATGACCATATGCACTATTGATGTGCATGCCCGGGATGTGGTAGCCAAGATGATTGCTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX6-3/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCAGTCAGAACCCAACC
R:
GAGAGCTGCCCGATTAGCATG
Band lengths:
251-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]