RnoEX0028678 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52595886-52600509:-
Coord C1 exon
chr10:52600383-52600509
Coord A exon
chr10:52597157-52597309
Coord C2 exon
chr10:52595886-52596011
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCCATGACTTCCTTTCTCAGGTT
3' ss Score
9.37
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GTTGTGCCTGTGTGAGAAAGCCCTTGCAGAGTACCTAGACACCAAGAGACTCGCCTTCCCTCGCTTTTACTTCCTGTCCTCCTCTGACCTGCTAGACATCCTTTCCAATGGCACAGCCCCACAACAG
Seq A exon
GTTCAACGTCACCTTTCCAAGCTCTTTGACAACATGGCTAAGATGCAGTTCCAGTTAGATGCCAGTCAGAACCCAACCAAGACAAGCCTGGGCATGTACAGCAAAGAGGAGGAATATGTGGCCTTCAGTGAGCCCTGTGACTGCAGTGGACAG
Seq C2 exon
GTTGAAATATGGTTAAACCGTGTGCTTCGTCACATGAAAGCCACTGTGAGGCATGAGATGACAGAGGCGGTCACTGCCTATGAGGAAAAGCCCAGGGATCAGTGGCTGTTTGATTACCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX6-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
PF083938=DHC_N2=FE(12.1=100)
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAGAAAGCCCTTGCAG
R:
AGCTGGGTAATCAAACAGCCA
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]