BtaEX6087270 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31047432-31051654:+
Coord C1 exon
chr19:31047432-31047558
Coord A exon
chr19:31049561-31049713
Coord C2 exon
chr19:31051529-31051654
Length
153 bp
Sequences
Splice sites
3' ss Seq
GACATGCTCTCCACTTATAGGTT
3' ss Score
9.83
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GCTGTGCCTGTGTGAGAAGGCCCTGGTGGAGTACCTGGACACAAAAAGGCTTGCCTTCCCCAGGTTTTACTTCCTCTCCTCTTCTGATCTTCTAGACATTCTTTCCAATGGCACAGCCCCTCAACAG
Seq A exon
GTTCAACGCCACCTTTCCAAACTCTTTGACAATATGGCCAAGATGCAGTTCCAACTGGACGCCAGTGAGAAGCCAACCAAGACCAGCCTTGGCATGTACAGCAAGGAAGGAGAATATGTGGCCTTCAGCGAGCCCTGTGACTGCAGTGGGCAG
Seq C2 exon
GTAGAAATATGGCTGAACCACGTGCTGGCTCACATGAAGGCCACGGTGAGGCACGAGATGACAGAAGGTATAACCGCCTACGAAGAAAAGCCCAGGGAACAGTGGCTCTTTGACTACCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'23-30,'23-29,24-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.048
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
PF083938=DHC_N2=FE(12.1=100)
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCTGTGTGAGAAGGC
R:
GCTGGGTAGTCAAAGAGCCAC
Band lengths:
248-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]