MmuEX7006802 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66075044-66080621:-
Coord C1 exon
chr11:66080495-66080621
Coord A exon
chr11:66076312-66076464
Coord C2 exon
chr11:66075044-66075169
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCCATATCTTCCTTTCTCAGGTT
3' ss Score
10.39
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTATGCCTGTGTGAGAAAGCCCTAGCAGAGTATCTAGACACCAAGAGGCTCAGCTTCCCTCGCTTTTACTTCCTGTCCTCCTCTGACCTGCTGGACATCCTTTCCAATGGCACAGCTCCACAACAG
Seq A exon
GTTCAACGGCACCTCTCCAAGCTCTTTGACAACATGGCTAAGATGCAGTTCCAGTTAGATGCCAGTCAGAACCCAACCAAGACGAGCCTTGGCATGTACAGCAAAGAGGAGGAATATGTGGCCTTCAGTGAGGCCTGTGACTGCAGTGGGCAG
Seq C2 exon
GTTGAAATATGGCTGAACCGTGTTCTTCGTCACATGAAAGCCACTGTGAGGCATGAGATGACAGAGGGGGTCACTGCCTATGAGGAAAAGCCCAGGGATCAGTGGCTGTTTGATTACCCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'25-30,'25-29,26-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.048
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
PF083938=DHC_N2=FE(12.1=100)
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTGAGAAAGCCCTAGC
R:
TGAGCCGGGTAATCAAACAGC
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types