GgaEX6015782 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1062151-1066321:+
Coord C1 exon
chr18:1062151-1062277
Coord A exon
chr18:1065071-1065223
Coord C2 exon
chr18:1066196-1066321
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTCTACAATTCTGCCTGCAGGTA
3' ss Score
9.9
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTGTCACTGTGTGAGAAGGCTTTGGCTGAATATTTGGACAGGAAGAGGTTGGCCTTTCCCAGATTTTACTTCATTTCTTCTGCAGATTTATTGGATATTCTTTCCAATGGCACCAACCCACAGCTG
Seq A exon
GTACAACGTCATCTTTCCAAACTCTTTGACAGCCTGGCCAAGATGAGATTCCAGCTGGACTCTGAGCAAAAGCCAACCAAGATTGGCCTGGGAATGTACAGCAAGGAGGAGGAGTACGTCAGCTTCAGCGAGCCATGTGACTGCAGTGGGCAG
Seq C2 exon
GTTGAGGTCTGGCTGAATCATGTACTGAACAGCATGAGGGCTACAGTCAGAGATGAGATGACAGAAGCTGTAACAGCGTATGAGGAGAAGCCGAGGGAACAGTGGCTCTTTGATTACCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
PF083938=DHC_N2=FE(12.1=100)
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAGAAGGCTTTGGCTG
R:
AGCAGGGTAATCAAAGAGCCAC
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]