HsaEX6021154 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11597638-11604564:+
Coord C1 exon
chr17:11597638-11597764
Coord A exon
chr17:11603048-11603200
Coord C2 exon
chr17:11604439-11604564
Length
153 bp
Sequences
Splice sites
3' ss Seq
GGCCTGGTTTCCCTTCATAGGTT
3' ss Score
9.62
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTGTGCCTGTGTGAGAAGGCCCTGGCAGAGTACCTCGACACCAAGAGGCTTGCCTTCCCGCGGTTTTACTTTCTCTCCTCCTCCGATCTGTTAGACATCCTTTCCAACGGCACAGCTCCACAACAG
Seq A exon
GTTCAACGTCACCTTTCCAAACTCTTTGACAACATGGCCAAGATGCGATTCCAGCTAGATGCCAGTGGGGAACCAACCAAGACAAGCCTCGGCATGTACAGCAAAGAAGAGGAGTATGTGGCTTTCAGTGAGCCCTGTGACTGCAGCGGGCAG
Seq C2 exon
GTAGAAATATGGCTGAACCATGTCCTTGGTCACATGAAGGCCACTGTGAGGCATGAGATGACAGAAGGTGTAACTGCCTATGAAGAAAAGCCGAGGGAGCAGTGGCTTTTTGACCACCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.048
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
PF083938=DHC_N2=FE(12.1=100)
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGCCTGTGTGAGAAGGC
R:
CTGGGTGGTCAAAAAGCCACT
Band lengths:
248-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)