RnoEX0029063 @ rn6
Exon Skipping
Gene
ENSRNOG00000007649 | Dnm2
Description
dynamin 2 [Source:RGD Symbol;Acc:2513]
Coordinates
chr8:22519373-22521943:+
Coord C1 exon
chr8:22519373-22519473
Coord A exon
chr8:22519600-22519632
Coord C2 exon
chr8:22521892-22521943
Length
33 bp
Sequences
Splice sites
3' ss Seq
ACAGCCATTCTCTCAACCAGGGC
3' ss Score
6.75
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CAATCTCTCCTGTTTTTCCTTTGACCACTCCACTTCTTTCTCTGGATTCCGGGGCCTTCCCACTTACCCAGCTGTTTCTATACTGAGGAGCTGGTCACAGG
Seq A exon
GGCCCCAGCCAGGCCTTGTGAAGAGGACACTGG
Seq C2 exon
TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGGGCCATACCTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007649-'28-20,'28-19,29-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.417 C2=0.185
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(3.4=100)
A:
PF0103115=Dynamin_M=FE(3.7=100)
C2:
PF0103115=Dynamin_M=PD(4.1=66.7)
Main Inclusion Isoform:
ENSRNOT00000065028fB4342
Main Skipping Isoform:
ENSRNOT00000065028fB4344
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTCCACTTCTTTCTCTGGA
R:
CCTCTTCTTGTTCAGCTGCGT
Band lengths:
115-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]