RnoEX0029071 @ rn6
Exon Skipping
Gene
ENSRNOG00000007649 | Dnm2
Description
dynamin 2 [Source:RGD Symbol;Acc:2513]
Coordinates
chr8:22518232-22521943:+
Coord C1 exon
chr8:22518232-22518302
Coord A exon
chr8:22519444-22519473
Coord C2 exon
chr8:22521892-22521943
Length
30 bp
Sequences
Splice sites
3' ss Seq
GGGCCTTCCCACTTACCCAGCTG
3' ss Score
4.5
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
ATCCTTCTTCTGATTGACATTGAGCAGTCCTACATCAACACAAACCATGAAGACTTCATTGGATTTGCCAA
Seq A exon
CTGTTTCTATACTGAGGAGCTGGTCACAGG
Seq C2 exon
TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGGGCCATACCTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007649_MULTIEX2-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.185
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=FE(3.4=100)
C2:
PF0103115=Dynamin_M=PD(4.1=66.7)
Main Inclusion Isoform:
ENSRNOT00000065028fB4344
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTTCTGATTGACATTGAGCA
R:
ATGGCCCTCTTCTTGTTCAGC
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]