MmuEX1008794 @ mm10
Exon Skipping
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21485651-21489794:+
Coord C1 exon
chr9:21485651-21485721
Coord A exon
chr9:21487047-21487076
Coord C2 exon
chr9:21489743-21489794
Length
30 bp
Sequences
Splice sites
3' ss Seq
GGGCCTTCCCACTTACCCAGCTG
3' ss Score
4.5
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
ATTCTTCTTCTGATTGACATTGAGCAGTCGTACATCAACACAAACCATGAAGACTTCATTGGATTTGCCAA
Seq A exon
CTGTTTCTATACTGAGGAGCTGGTCACAGG
Seq C2 exon
TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGGGCCATACCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335_MULTIEX2-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.131
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(13.1=100)
A:
PF0103115=Dynamin_M=FE(5.1=100)
C2:
PF0103115=Dynamin_M=PD(4.1=66.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCTTCTGATTGACATTGAGCA
R:
ATGGCCCTCTTCTTGTTCAGC
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types