BtaEX0011746 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013362 | DNM2
Description
Bos taurus dynamin 2 (DNM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099369]
Coordinates
chr7:16498706-16501451:+
Coord C1 exon
chr7:16498706-16498776
Coord A exon
chr7:16500123-16500152
Coord C2 exon
chr7:16501400-16501451
Length
30 bp
Sequences
Splice sites
3' ss Seq
GGCCTTCCCACTTCCCCCAGCTG
3' ss Score
8.01
5' ss Seq
CGGGTGGGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
ATTCTTCTTCTGATTGACATTGAGCAGTCCTACATCAACACCAACCACGAGGACTTCATTGGATTTGCCAA
Seq A exon
CTGTTACTATACTGAGCAGCTGGTGACCGG
Seq C2 exon
CGCCCAGCAGAGGAGCACACAGCTGAATAAGAAGAGAGCCGTCCCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013362_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=FE(3.4=100)
C2:
PF0103115=Dynamin_M=PD(4.1=66.7)
Main Inclusion Isoform:
ENSBTAT00000036123fB2222
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGATTGACATTGAGCAGTCCT
R:
TTGGGGACGGCTCTCTTCTTA
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development