HsaEX0020453 @ hg38
Exon Skipping
Gene
ENSG00000079805 | DNM2
Description
dynamin 2 [Source:HGNC Symbol;Acc:HGNC:2974]
Coordinates
chr19:10802288-10805967:+
Coord C1 exon
chr19:10802288-10802358
Coord A exon
chr19:10803639-10803668
Coord C2 exon
chr19:10805916-10805967
Length
30 bp
Sequences
Splice sites
3' ss Seq
GGCCTTCCCACTTACCCCAGCTG
3' ss Score
5.66
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
ATTCTTCTGCTGATCGACATTGAGCAGTCCTACATCAACACGAACCATGAGGACTTCATCGGGTTTGCCAA
Seq A exon
CTGTTACTATACTGAGCAGCTGGTGACCTG
Seq C2 exon
TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGAGCCATCCCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079805_MULTIEX2-5/8=4-6
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(7.8=100)
A:
PF0103115=Dynamin_M=FE(3.8=100)
C2:
PF0103115=Dynamin_M=PD(4.1=66.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTGATCGACATTGAGCA
R:
TGGGGATGGCTCTCTTCTTGT
Band lengths:
113-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development