RnoEX0029441 @ rn6
Exon Skipping
Gene
ENSRNOG00000013196 | Dok5
Description
docking protein 5 [Source:RGD Symbol;Acc:1562846]
Coordinates
chr3:168441213-168446008:+
Coord C1 exon
chr3:168441213-168441402
Coord A exon
chr3:168441525-168441638
Coord C2 exon
chr3:168445338-168446008
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACCGATGTTTTATGGTGCAGTGT
3' ss Score
6.6
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
Exon sequences
Seq C1 exon
AGAGATTCAATGTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAGATTACATATGAGTACATCTGTCTTTGGGACATCCAGAATCCCAGAGTTAAACTCATCTCTTGGCCGCTAAGTGCCCTGCGGCGGTATGGACGTGACACCACGTGGTTCACTTTTGAGGCAGGGAG
Seq A exon
TGTTCCGGTACCTGGCATCCCCTTCCATCCCGGGGAGGATTCTAACTCTTCGGAGATATGACACGAATTTCGTTACTCCATTTGATGACTTCCCCACACGCTGAGGCTGAGCTG
Seq C2 exon
GAGTGAGGGAGGCTCAGGAGACATTTGGCAGACTGTGCTAAATAATTTCCACACGTGAATGCTTTTCTTCACTGACAAGAGAGAGAAAGAGGTGAGGGGGGGTCTTAGGCCTTTGACATCATTTAAAAAGGAATTTTAGGTATTCCGAGAAAGGTGGAAACTTGAGTATTTTATGCACAGATGCCTCCCTTAAACCTAGGAGAGGGGTTCTTGCTTGGGGTGTGAGGCCATCTGAACAGACTAGGAGAATTAGTAACTTTTCACATAGCTCACGCTAAATGCAGGCTCATCGGTGAGCTCTCCCTGTACAGAGAAGTTGCACTCTCTTCTAACTGAAGAGCCTATAAGAAAAATCAAAACCATGTTGATGTCTCCGGGATACTCACGACTGGTGGCCCAAGCCACCGAGCTTTCTCTGTGTTGGACTGTAGGTTCATTTCTTATTATCAAGGAAGAAAAAGGAAGTGGACAGTGTATCTCCTTTTTCACTATGTTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013196-'9-12,'9-11,10-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.550 C2=0.000
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(64.3=100)
A:
PF0217412=IRS=PD(7.0=23.8)
C2:
PF0217412=IRS=PD(18.5=75.0)
Main Inclusion Isoform:
ENSRNOT00000017654fB4406
Main Skipping Isoform:
ENSRNOT00000017654fB4407
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCACTTTTGAGGCAGGG
R:
CTCACACCCCAAGCAAGAACC
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]