RnoEX0029440 @ rn6
Exon Skipping
Gene
ENSRNOG00000013196 | Dok5
Description
docking protein 5 [Source:RGD Symbol;Acc:1562846]
Coordinates
chr3:168438446-168449567:+
Coord C1 exon
chr3:168438446-168438565
Coord A exon
chr3:168441213-168441402
Coord C2 exon
chr3:168449432-168449567
Length
190 bp
Sequences
Splice sites
3' ss Seq
ACGTTTTGTTTTTCTCCCAGAGA
3' ss Score
8.99
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCTTGAGGCAGACGAATGGTGCAAGGTTCTCCAGATAGAGTGTGTGGGGACCAGAATCAATGACATCAGCCTCGGAGAACCTGACTTATTGGCCACTGGGGTGGAACGAGAACAGAGCG
Seq A exon
AGAGATTCAATGTGTATTTGATGCCATCTCCTAACTTAGATGTACATGGCGAATGTGCCTTGCAGATTACATATGAGTACATCTGTCTTTGGGACATCCAGAATCCCAGAGTTAAACTCATCTCTTGGCCGCTAAGTGCCCTGCGGCGGTATGGACGTGACACCACGTGGTTCACTTTTGAGGCAGGGAG
Seq C2 exon
GATGTGTGAGACTGGTGAAGGATTATTTATTTTTCAAACACGAGACGGCGAGGCCATCTACCAGAAGGTCCACTCTGCTGCCTTGGCCATAGCTGAGCAGCACGAACGCTTGCTGCAGAGCGTGAAGAATTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013196-'8-13,'8-4,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
A:
PF0217412=IRS=FE(64.3=100)
C2:
PF0217412=IRS=PD(32.7=69.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGAGGCAGACGAATGGTG
R:
GAATTCTTCACGCTCTGCAGC
Band lengths:
251-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]